View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_20 (Length: 321)
Name: NF17698_high_20
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 13519198 - 13518890
Alignment:
| Q |
1 |
aaaataaaaaacaatgcttgaaaacaattgatctacggtaaggctcggacactcccactctaccagcaagctattatttcttgttcttcaagaaaagata |
100 |
Q |
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| T |
13519198 |
aaaataaaaaacaatgcttgaaaacaattaatctacggtaaggctcggacactcccactctaccagctagctatt---tcttgttcttcaagaaaagata |
13519102 |
T |
|
| Q |
101 |
tgtctgnnnnnnnn-gacacgatcgattagttttaaataaaaaggatttaatgagaagtagtaagaagattcaaaagcacatacgagtaacgctccaaca |
199 |
Q |
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| T |
13519101 |
tgtctgaaataagaagacacgatcgattagttttaaataaaaaggatttaatgagaagtagtaactaacaaggaaagcacatacgagtaacgctccaaca |
13519002 |
T |
|
| Q |
200 |
cttaatccaatgattgctctgactacctccatgcaagcaaaccttagaaagcggcgataatgctcttggatcacagcaaacggtgatgaagcagccacca |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13519001 |
cttaatccaatgattgctctgactacctccatgcaagcaaaccttagaaagcggcgataatgctcttggatcacagcaaacggtgatgaagcagccacca |
13518902 |
T |
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| Q |
300 |
tagggttggttt |
311 |
Q |
| |
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|||||||||||| |
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| T |
13518901 |
tagggttggttt |
13518890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 13553992 - 13553684
Alignment:
| Q |
1 |
aaaataaaaaacaatgcttgaaaacaattgatctacggtaaggctcggacactcccactctaccagcaagctattatttcttgttcttcaagaaaagata |
100 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||| |||||| ||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
13553992 |
aaaataaaaaacaatgcttgaaaacaattaatctacggtaaggcccggacattcccactctaccagcaagctatt---tcttgttcttcaagaaaagata |
13553896 |
T |
|
| Q |
101 |
tgtctgnnnnnnnn-gacacgatcgattagttttaaataaaaaggatttaatgagaagtagtaagaagattcaaaagcacatacgagtaacgctccaaca |
199 |
Q |
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| T |
13553895 |
tgtctgaaaaaagaagacacgatcgattagttttaaataaaaaggatttaatgagaagtagtaactaacaaggaaagcacatacgagtaacgctccaaca |
13553796 |
T |
|
| Q |
200 |
cttaatccaatgattgctctgactacctccatgcaagcaaaccttagaaagcggcgataatgctcttggatcacagcaaacggtgatgaagcagccacca |
299 |
Q |
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| T |
13553795 |
cttaatccaatgattgctctgactacctccatgcaagcaaaccttagcaagcggcgatagtgctcttggatcacagcaaacggtgatgaagcagccacca |
13553696 |
T |
|
| Q |
300 |
tagggttggttt |
311 |
Q |
| |
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|||||||||||| |
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| T |
13553695 |
tagggttggttt |
13553684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 162 - 296
Target Start/End: Complemental strand, 13540425 - 13540281
Alignment:
| Q |
162 |
aagaagattcaaaagcac----atacgagtaacgctccaacacttaatccaatgattgctctgactacctccatgcaagcaaaccttagaaagcggcgat |
257 |
Q |
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|||||||||||||||||| |||| || ||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
13540425 |
aagaagattcaaaagcacgtatataccagcaacgctccaacacctaatccaatggttgctctgactacctccatgcaaacaaaccttcgaaagcggcgac |
13540326 |
T |
|
| Q |
258 |
aatgctc------ttggatcacagcaaacggtgatgaagcagcca |
296 |
Q |
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| | ||| |||||||||||||||||||||||||||||||| |
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| T |
13540325 |
agtactcttggagttggatcacagcaaacggtgatgaagcagcca |
13540281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 11 - 106
Target Start/End: Complemental strand, 13540582 - 13540493
Alignment:
| Q |
11 |
acaatgcttgaaaacaattgatctacggtaaggctcggacactcccactctaccagcaagctattatttcttgttcttcaagaaaagatatgtctg |
106 |
Q |
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|||||| |||||||||| | ||||| || ||||||||||||||||| |||||||| ||||||| ||| ||||||||||||||||||||||| |
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| T |
13540582 |
acaatgtttgaaaacaactaatctatggcaaggctcggacactccccctctaccaacaagcta------cttcttcttcaagaaaagatatgtctg |
13540493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 106
Target Start/End: Complemental strand, 13587977 - 13587889
Alignment:
| Q |
16 |
gcttgaaaacaattgatctacggtaagg-ctcggacactcccactctaccagcaagctattatttcttgttcttcaagaaaagatatgtctg |
106 |
Q |
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|||||||||||| | |||||||| || | ||||||||||||||||| |||||||||| || |||||||||||| | |||||||||||||| |
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| T |
13587977 |
gcttgaaaacaactaatctacggcaaagactcggacactcccactcaaccagcaagc---tacttcttgttcttcgacaaaagatatgtctg |
13587889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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