View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_22 (Length: 309)
Name: NF17698_high_22
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_22 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 13 - 309
Target Start/End: Complemental strand, 50235660 - 50235364
Alignment:
| Q |
13 |
gaacctacattgcaggctagcaccgttttgaatagtgaattctttactcaaaacacataaagttatgcaccataaaacgtatgtaaagaatccacatcaa |
112 |
Q |
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| T |
50235660 |
gaacctacattgcaggctagcaccgttttgaatagtgaattctttactcaaaacacataaagttatgcaccataaaacgtatgtaaagaatccacatcaa |
50235561 |
T |
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| Q |
113 |
tcattnnnnnnnngtgagagatatattcaatctgaacaaacgaatcccataagcacaaatcaaggtgttacattatatattgtaacaaattaattaattt |
212 |
Q |
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| T |
50235560 |
tcattaaaaaaaagtgagagatatattcaatctgaacaaacgaatcccataagcacaaatcaaggtgttacattatatattgtaacaaattaattaattt |
50235461 |
T |
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| Q |
213 |
atcccttccaatcaatattgtttcattttctctctagaaatacattatataacgcttacaaagagacaaaaatggaagcaaaggcaataacagcacc |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50235460 |
atcccttccaatcaatattgtttcattttctctctagaaatacattatataacgcttacaaagagacaaaaatggaagcaaaggcaataacagcacc |
50235364 |
T |
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