View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_23 (Length: 304)
Name: NF17698_high_23
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_23 |
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Alignment Details
Target: chr3 (Bit Score: 110; Significance: 2e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 135 - 287
Target Start/End: Original strand, 22278191 - 22278346
Alignment:
| Q |
135 |
acaacattgaatacaatttcatcagcattaaacctaatcgattcaaagaaacaaaatctcaaaaacgcattcgaaaatcttcaatcccaa---tcttcac |
231 |
Q |
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| T |
22278191 |
acaacattggaaacgatttcatcagcattaaacctaatcgattccaagaaacaaaatctcaaaatcgcattcgaaaatcttcaatccaaatcttcttcac |
22278290 |
T |
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| Q |
232 |
ttcctctctcatggcttcaactcgattcccacttcacctctctccaacactctctc |
287 |
Q |
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| T |
22278291 |
tccctctctcatggcttcaactcgattcccacttcacctctctccaacaatctctc |
22278346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 23042852 - 23042729
Alignment:
| Q |
18 |
acctaagaattgctccctcggcctccagctgtctcttcctttgctcgcgggtatgcag----aatgcatcatcattctttccattattatctcaaattcc |
113 |
Q |
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||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23042852 |
acctaagaatttctccctcgtcctccagctgtctcttcctttgctcgcgggtatgcaggcagaatgcatcatcattctttccattattatctcaaattcc |
23042753 |
T |
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| Q |
114 |
caattcaaaacaatggatacaaca |
137 |
Q |
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| T |
23042752 |
cgattcaaaacaatggatacaaca |
23042729 |
T |
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