View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17698_high_27 (Length: 271)

Name: NF17698_high_27
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17698_high_27
NF17698_high_27
[»] chr7 (10 HSPs)
chr7 (1-254)||(34721088-34721337)
chr7 (18-246)||(34735170-34735398)
chr7 (18-246)||(34727413-34727641)
chr7 (18-246)||(34730571-34730799)
chr7 (18-228)||(18929085-18929295)
chr7 (1-197)||(34715585-34715781)
chr7 (15-119)||(18924179-18924283)
chr7 (18-221)||(34717323-34717525)
chr7 (185-228)||(18924337-18924380)
chr7 (163-224)||(36215590-36215651)
[»] chr4 (23 HSPs)
chr4 (156-248)||(6624090-6624182)
chr4 (151-248)||(6794653-6794750)
chr4 (164-224)||(4126135-4126195)
chr4 (164-224)||(4322800-4322860)
chr4 (173-248)||(6547564-6547639)
chr4 (173-248)||(6814005-6814080)
chr4 (174-248)||(6500009-6500083)
chr4 (163-224)||(4333795-4333856)
chr4 (156-248)||(6726144-6726236)
chr4 (173-248)||(6672887-6672962)
chr4 (145-228)||(6751050-6751133)
chr4 (173-228)||(6756696-6756751)
chr4 (164-222)||(4343186-4343244)
chr4 (150-228)||(8413028-8413106)
chr4 (164-245)||(4358654-4358735)
chr4 (177-221)||(4135482-4135526)
chr4 (30-122)||(4322902-4322994)
chr4 (164-224)||(4351473-4351533)
chr4 (80-224)||(7888444-7888588)
chr4 (173-248)||(6535313-6535388)
chr4 (173-248)||(6714042-6714117)
chr4 (173-228)||(6834399-6834454)
chr4 (183-228)||(6649296-6649341)
[»] scaffold0373 (1 HSPs)
scaffold0373 (151-248)||(11553-11650)
[»] chr6 (3 HSPs)
chr6 (164-248)||(5075405-5075489)
chr6 (173-248)||(5183626-5183701)
chr6 (171-228)||(5381900-5381957)
[»] scaffold0294 (1 HSPs)
scaffold0294 (174-224)||(10366-10416)
[»] chr8 (1 HSPs)
chr8 (92-124)||(3313205-3313237)


Alignment Details
Target: chr7 (Bit Score: 217; Significance: 1e-119; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 34721337 - 34721088
Alignment:
Q  1 ttccccggtggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgt 100  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    |||||||||||||||    
T  34721337 ttccccggaggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagtcgtagat----ttgtcaaggaagtgt 34721242  T
Q  101 aataatcatcacaacaagagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactt 200  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  34721241 aataatcatcacaacaagagatgttgatttacttcgcaggcttcaggtggatcatgtgtatacaatgaattcaatggatgagagtgaatctcttgaactt 34721142  T
Q  201 tttagttggtatgcattcaagcaaccaattccaagagaaggttttgctcacagt 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34721141 tttagttggtatgcattcaagcaaccaattccaagagaaggttttgctcacagt 34721088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 34735398 - 34735170
Alignment:
Q  18 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 117  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||||||||||  ||||    |||||||| || ||||||||  |||||||||||||||||    
T  34735398 tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaa 34735299  T
Q  118 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 217  Q
    |||||| ||||||||||   |||||| | ||  |  ||||||||| |||||| | ||||||    | |||||||||||| |||||||||||| |||||||    
T  34735298 gagatgatgatttacttggtaggcttaaagttcactatgtgtatagaatgaaagaaatggacagcaatgaatctcttgagctttttagttggcatgcatt 34735199  T
Q  218 caagcaaccaattccaagagaaggttttg 246  Q
    ||| ||||||||||| | |||||||||||    
T  34735198 caaacaaccaattcctatagaaggttttg 34735170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 34727641 - 34727413
Alignment:
Q  18 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 117  Q
    ||||||||| | ||||||||||||||| || |||| ||| ||||||||||   ||||  |  ||||||| || ||||||||  |||||| ||||| ||||    
T  34727641 tttcttgtgcttgacgatgtgaataaagtggaccaattgaatgctttgtgtggaagtcatgaatggtttggtgaaggaagtagaataatgatcactacaa 34727542  T
Q  118 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 217  Q
    |||||| ||||||||||   |||||| | || ||  ||||||||| |||||| | ||||||||  | |||||||||||| |||||||||||| |||||||    
T  34727541 gagatgatgatttacttagtaggcttaaagttgactatgtgtatagaatgaaagaaatggatggcaatgaatctcttgagctttttagttggcatgcatt 34727442  T
Q  218 caagcaaccaattccaagagaaggttttg 246  Q
    ||||||||||||||| | |||||||||||    
T  34727441 caagcaaccaattcctatagaaggttttg 34727413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 18 - 246
Target Start/End: Complemental strand, 34730799 - 34730571
Alignment:
Q  18 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 117  Q
    ||||||||| |||||||||||||||||||| |||| ||| |||||||||||  ||||    |||||||| || ||||||||  |||||||||||||||||    
T  34730799 tttcttgtgctggacgatgtgaataaactggaccaattgaatgctttgtgcggaagtcacggatggtttggtgaaggaagtagaataatcatcacaacaa 34730700  T
Q  118 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 217  Q
    |||||| ||||||||||   |||||| | ||  |  ||||||||| |||||| | ||||||    | |||||||||||| ||||| |||||| ||| |||    
T  34730699 gagatgatgatttacttggtaggcttaaagttcactatgtgtatagaatgaaagaaatggacagcaatgaatctcttgagcttttcagttggcatgtatt 34730600  T
Q  218 caagcaaccaattccaagagaaggttttg 246  Q
    ||||||||||||||| | |||||||||||    
T  34730599 caagcaaccaattcctatagaaggttttg 34730571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 18 - 228
Target Start/End: Original strand, 18929085 - 18929295
Alignment:
Q  18 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 117  Q
    |||||||||||||||||||||||||||  | |||| ||| |||||||||||  ||||     ||||||| || ||||||||  |||||||||||||||||    
T  18929085 tttcttgtgttggacgatgtgaataaagaggaccaattgaatgctttgtgcggaagtcacgaatggtttggtgaaggaagtagaataatcatcacaacaa 18929184  T
Q  118 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 217  Q
    |||||| ||||||||||   |||||| | ||  |  ||||||||| |||||| | |||||| || | |||||||||||| |||||||||||| |||||||    
T  18929185 gagatgatgatttacttagtaggcttaaagttcactatgtgtatagaatgaaagaaatggacgacaatgaatctcttgagctttttagttggcatgcatt 18929284  T
Q  218 caagcaaccaa 228  Q
    |||||||||||    
T  18929285 caagcaaccaa 18929295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 34715781 - 34715585
Alignment:
Q  1 ttccccggtggaaaatgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgt 100  Q
    ||||||| ||||| || || |||||| | |||||||||||||||    |||| |||| |||||||||||||||  | | ||||||| ||||||||||| |    
T  34715781 ttccccgttggaagatattacttgtggttgacgatgtgaataaaaaagaccaattgggtgctttgtgcataagacgcaaatggtttggtcaaggaagtat 34715682  T
Q  101 aataatcatcacaacaagagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaa 197  Q
    ||||||||||||||| ||||||  |||||||||||   ||||||||||||| ||||| |||||| |||| |||||| |||| |||||||| ||||||    
T  34715681 aataatcatcacaacgagagatcatgatttacttcggtggcttcaggtggaccatgtatatacagtgaatgcaatgaatgacagtgaatcccttgaa 34715585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 15 - 119
Target Start/End: Original strand, 18924179 - 18924283
Alignment:
Q  15 atgtttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaa 114  Q
    ||||| |||||| ||||| |||||||| ||| | | || ||||||||||||||||||||||| | ||||||| ||||||||||| |||||||||||||||    
T  18924179 atgttacttgtggtggacaatgtgaatgaacagcatcaattggatgctttgtgcataagttgcaaatggtttggtcaaggaagtataataatcatcacaa 18924278  T
Q  115 caaga 119  Q
    |||||    
T  18924279 caaga 18924283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 34717525 - 34717323
Alignment:
Q  18 tttcttgtgttggacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaa 117  Q
    ||||||||| |||||||||||||||||||| | |  ||| |||||||||| | ||||     ||||||| || |||||||   |||||||||||||||||    
T  34717525 tttcttgtgctggacgatgtgaataaactggagccattgaatgctttgtgaagaagtcagcaatggtttggttaaggaaggtgaataatcatcacaacaa 34717426  T
Q  118 gagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcatt 217  Q
    |||||| |||| |||||   |||||| ||||||| ||||| |||| ||| || | ||||||  ||| ||||||||||||| |||| ||||||  ||||||    
T  34717425 gagatgatgatctactttgtaggcttaaggtgga-catgtatatagaatcaaagaaatggacaagaatgaatctcttgaagttttcagttggattgcatt 34717327  T
Q  218 caag 221  Q
    ||||    
T  34717326 caag 34717323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 228
Target Start/End: Original strand, 18924337 - 18924380
Alignment:
Q  185 tgaatctcttgaactttttagttggtatgcattcaagcaaccaa 228  Q
    |||||||||||| |||||||||| ||||||||||||||||||||    
T  18924337 tgaatctcttgagctttttagtttgtatgcattcaagcaaccaa 18924380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 163 - 224
Target Start/End: Complemental strand, 36215651 - 36215590
Alignment:
Q  163 caatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 224  Q
    ||||||| | ||||||||| ||||||||  |||| |||||||||||| ||||||||||||||    
T  36215651 caatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaagcaa 36215590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 6624182 - 6624090
Alignment:
Q  156 gtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    |||||||||||  | | |||||||||||||||||||||||| ||||| |||||| |||||||||||||||||| |||   |||||||||||||    
T  6624182 gtgtatacaattgaagaaatggatgagagtgaatctcttgagcttttcagttggcatgcattcaagcaaccaagtccggcagaaggttttgct 6624090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 248
Target Start/End: Original strand, 6794653 - 6794750
Alignment:
Q  151 atcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    |||| |||||||||||  | | ||||||||| |||||||||||| | ||||| |||||| |||||||||||||||||| ||||| ||||  |||||||    
T  6794653 atcaggtgtatacaatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccaatagaatattttgct 6794750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 4126195 - 4126135
Alignment:
Q  164 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 224  Q
    |||||| | ||||||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  4126195 aatgaaagaaatggatgaaagtgaatctcttgaactttttagttggcatgctttcaagcaa 4126135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 224
Target Start/End: Complemental strand, 4322860 - 4322800
Alignment:
Q  164 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 224  Q
    |||||| | ||||||||| |||||||||||||| |||||||||||| ||||||||||||||    
T  4322860 aatgaaagaaatggatgaaagtgaatctcttgagctttttagttggcatgcattcaagcaa 4322800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 6547639 - 6547564
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    ||||||||| | |||||||||||| || || |||||| |||||||||||||||||| ||||| ||||| |||||||    
T  6547639 aatggatgaaattgaatctcttgagctattcagttggcatgcattcaagcaaccaagtccaatagaagattttgct 6547564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 6814005 - 6814080
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    ||||||||| |||||||||||| | ||||| |||||| |||||||||||||||||| ||| | ||||| |||||||    
T  6814005 aatggatgaaagtgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccgatagaagattttgct 6814080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 174 - 248
Target Start/End: Complemental strand, 6500083 - 6500009
Alignment:
Q  174 atggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    ||||| || |||||||||||||| ||||| || ||| |||||||||||||||||| ||||| ||||| |||||||    
T  6500083 atggacgaaagtgaatctcttgagcttttcagctggcatgcattcaagcaaccaactccaacagaagattttgct 6500009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 163 - 224
Target Start/End: Original strand, 4333795 - 4333856
Alignment:
Q  163 caatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 224  Q
    ||||||| | ||||||||| |||||||||||||| |||||||||| | ||||||||||||||    
T  4333795 caatgaaagaaatggatgaaagtgaatctcttgagctttttagtttgcatgcattcaagcaa 4333856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 248
Target Start/End: Original strand, 6726144 - 6726236
Alignment:
Q  156 gtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    |||||||||||  | | ||||||||| |||||||||||  | ||||| |||||| |||||||||||||| ||| ||||| ||||| |||||||    
T  6726144 gtgtatacaatagaagaaatggatgaaagtgaatctctcaagcttttcagttggcatgcattcaagcaatcaagtccaaaagaagattttgct 6726236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 6672887 - 6672962
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    ||||||||| ||||||||||| || ||||| |||||| |||| ||||||| ||||||||||  ||||| |||||||    
T  6672887 aatggatgaaagtgaatctctagagcttttcagttggcatgcgttcaagctaccaattccagtagaagattttgct 6672962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 228
Target Start/End: Original strand, 6751050 - 6751133
Alignment:
Q  145 aggtggatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 228  Q
    |||| ||||| |||||| |||| || | |||| | || |||||||||||||| ||||| |||||| ||||||||||||||||||    
T  6751050 aggttgatcaagtgtatgcaataaaagaaatgaacgaaagtgaatctcttgagcttttcagttggcatgcattcaagcaaccaa 6751133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 6756696 - 6756751
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 228  Q
    ||||||||| || ||||||||||| ||||| |||||| ||||||||||||||||||    
T  6756696 aatggatgaaagcgaatctcttgagcttttcagttggcatgcattcaagcaaccaa 6756751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 222
Target Start/End: Original strand, 4343186 - 4343244
Alignment:
Q  164 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagc 222  Q
    |||||| | ||||||||  |||||||||||||| |||||||||||| ||||||||||||    
T  4343186 aatgaaagaaatggatggaagtgaatctcttgagctttttagttggcatgcattcaagc 4343244  T

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Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 150 - 228
Target Start/End: Original strand, 8413028 - 8413106
Alignment:
Q  150 gatcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 228  Q
    ||||| ||||||||||| || | |||||| || |||||||||||  | ||||| |||||| ||||||||||||||||||    
T  8413028 gatcaagtgtatacaataaaagaaatggacgaaagtgaatctctcaagcttttcagttggcatgcattcaagcaaccaa 8413106  T

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Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 4358654 - 4358735
Alignment:
Q  164 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggtttt 245  Q
    |||||| | ||||||||| |||||||||||||| |||||||||||| | || ||||||||| |||  || ||||||| ||||    
T  4358654 aatgaaagaaatggatgaaagtgaatctcttgagctttttagttggcacgcgttcaagcaaacaaggcctagagaagatttt 4358735  T

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Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 4135526 - 4135482
Alignment:
Q  177 gatgagagtgaatctcttgaactttttagttggtatgcattcaag 221  Q
    ||||| |||||||||||||| |||||||||||| |||||||||||    
T  4135526 gatgaaagtgaatctcttgagctttttagttggcatgcattcaag 4135482  T

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Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 30 - 122
Target Start/End: Complemental strand, 4322994 - 4322902
Alignment:
Q  30 gacgatgtgaataaactgaaccagttggatgctttgtgcataagttgtagatggttttgtcaaggaagtgtaataatcatcacaacaagagat 122  Q
    |||||||||||||||||| ||||| |  ||||||||||   |||||||| |||||||  || ||| |||  ||||||||||||||| ||||||    
T  4322994 gacgatgtgaataaactggaccagctaaatgctttgtgtggaagttgtaaatggtttgctccaggtagtagaataatcatcacaactagagat 4322902  T

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Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 224
Target Start/End: Original strand, 4351473 - 4351533
Alignment:
Q  164 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 224  Q
    |||||| | |||| |||| |||||||||||||| | |||||||||| ||||||||||||||    
T  4351473 aatgaaagaaatgaatgaaagtgaatctcttgagcgttttagttggcatgcattcaagcaa 4351533  T

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Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 224
Target Start/End: Complemental strand, 7888588 - 7888444
Alignment:
Q  80 atggttttgtcaaggaagtgtaataatcatcacaacaagagatgttgatttacttcacaggcttcaggtggatcatgtgtatacaatgaacgcaatggat 179  Q
    ||||||| || | ||||||  |||| ||||||||||||| |||| |||||||||    |||||| | || || ||||| || | |||||| | |||||||    
T  7888588 atggtttggtaagggaagtagaatactcatcacaacaagggatgatgatttactcagtaggcttgaagtcgaccatgtatacagaatgaaggaaatggat 7888489  T
Q  180 gagagtgaatctcttgaactttttagttggtatgcattcaagcaa 224  Q
       ||||||||||| || ||||||| |||| ||||||||||||||    
T  7888488 agcagtgaatctctagagctttttaattggcatgcattcaagcaa 7888444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 6535388 - 6535313
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    ||||||||| |||||| ||||||  ||||| |||||| ||||||||||| |||||| ||| | ||||| |||||||    
T  6535388 aatggatgaaagtgaagctcttgctcttttcagttggcatgcattcaagaaaccaagtccgatagaagattttgct 6535313  T

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Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Original strand, 6714042 - 6714117
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    |||||||||||| ||||||||||| |||||| | ||| ||||||| |||||||||  |||   |||||||||||||    
T  6714042 aatggatgagagggaatctcttgagcttttttgctggcatgcatttaagcaaccatgtccgccagaaggttttgct 6714117  T

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Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 228
Target Start/End: Original strand, 6834399 - 6834454
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 228  Q
    |||||| || |||||||||||||| ||||| |||||| |||||||||||| |||||    
T  6834399 aatggacgaaagtgaatctcttgagcttttcagttggcatgcattcaagctaccaa 6834454  T

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Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 6649296 - 6649341
Alignment:
Q  183 agtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 228  Q
    |||||||||||||| ||||| |||||| |||||||||| |||||||    
T  6649296 agtgaatctcttgagcttttcagttggcatgcattcaatcaaccaa 6649341  T

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Target: scaffold0373 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0373
Description:

Target: scaffold0373; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 151 - 248
Target Start/End: Complemental strand, 11650 - 11553
Alignment:
Q  151 atcatgtgtatacaatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    |||| |||||||||||  | | ||||||||| |||||||||||| | ||||| |||||| |||||||||||||||||| ||||| ||||  |||||||    
T  11650 atcaggtgtatacaatagaagaaatggatgaaagtgaatctcttaagcttttcagttggcatgcattcaagcaaccaagtccaatagaatattttgct 11553  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 5075489 - 5075405
Alignment:
Q  164 aatgaacgcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    |||||| | ||||||||| ||||||||  |||| |||||||||||| |||||||||| ||| ||| ||| | ||||| |||||||    
T  5075489 aatgaaagaaatggatgaaagtgaatcaattgagctttttagttggcatgcattcaaacaagcaagtcctatagaagattttgct 5075405  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 173 - 248
Target Start/End: Complemental strand, 5183701 - 5183626
Alignment:
Q  173 aatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaattccaagagaaggttttgct 248  Q
    ||||||||| || |||||  |||| || ||||||||| |||||||||||||| ||  ||| |||||||||||||||    
T  5183701 aatggatgaaagcgaatcaattgagctatttagttggcatgcattcaagcaagcaggtcctagagaaggttttgct 5183626  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 5381900 - 5381957
Alignment:
Q  171 gcaatggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaaccaa 228  Q
    |||||||||||  |||||||  |||| |||||||| ||| ||||||||||||||||||    
T  5381900 gcaatggatgattgtgaatcaattgagctttttagctggcatgcattcaagcaaccaa 5381957  T

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Target: scaffold0294 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 224
Target Start/End: Complemental strand, 10416 - 10366
Alignment:
Q  174 atggatgagagtgaatctcttgaactttttagttggtatgcattcaagcaa 224  Q
    |||||||| ||||||||  |||| |||||||||||| ||||||||||||||    
T  10416 atggatgatagtgaatcaattgagctttttagttggcatgcattcaagcaa 10366  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 3313205 - 3313237
Alignment:
Q  92 aggaagtgtaataatcatcacaacaagagatgt 124  Q
    ||||||| |||||||||||||||||||||||||    
T  3313205 aggaagtataataatcatcacaacaagagatgt 3313237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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