View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_36 (Length: 221)
Name: NF17698_high_36
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_36 |
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Alignment Details
Target: chr4 (Bit Score: 141; Significance: 4e-74; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 41 - 200
Target Start/End: Complemental strand, 35107214 - 35107054
Alignment:
| Q |
41 |
aaacaaaagacgagtaacaaagcttgttctgagtt-aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagt |
139 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
35107214 |
aaacaaaagacgagtaacaaagcttgttctgagtttaaccagagatttcaatggctttgacttcaggcttcttgatctcttccttagggacagtgacagc |
35107115 |
T |
|
| Q |
140 |
gagaacaccattctccattgcagctttcacttgatccattttcgcattctctggtaatcta |
200 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
35107114 |
gagaacaccattctccatagcagctttcacttgatccattttcgcattctctggtaatcta |
35107054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 35098000 - 35097877
Alignment:
| Q |
76 |
aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc |
175 |
Q |
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|||||||||||||||||| || | |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
35098000 |
aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc |
35097901 |
T |
|
| Q |
176 |
cattttcgcattctctggtaatct |
199 |
Q |
| |
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||||||||||||||| || ||||| |
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| T |
35097900 |
cattttcgcattctcaggcaatct |
35097877 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 76 - 199
Target Start/End: Complemental strand, 35098289 - 35098166
Alignment:
| Q |
76 |
aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc |
175 |
Q |
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|||||||||||||||||| || | |||||||||||||||||||| || || ||||| |||||||||||||||||||||||||||||||||||||| || |
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| T |
35098289 |
aaccagagatttcaatggacttaacatcaggcttcttgatctcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttggtc |
35098190 |
T |
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| Q |
176 |
cattttcgcattctctggtaatct |
199 |
Q |
| |
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||||||||||||||| || ||||| |
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| T |
35098189 |
cattttcgcattctcaggcaatct |
35098166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 35072682 - 35072806
Alignment:
| Q |
76 |
aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc |
175 |
Q |
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||||||||||||| |||| || | ||||| ||||| | ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
35072682 |
aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc |
35072781 |
T |
|
| Q |
176 |
cattttcgcattctctggtaatcta |
200 |
Q |
| |
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||||||||||||||||||| ||||| |
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|
| T |
35072782 |
cattttcgcattctctggttatcta |
35072806 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 77 - 199
Target Start/End: Original strand, 36940478 - 36940600
Alignment:
| Q |
77 |
accagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatcc |
176 |
Q |
| |
|
||||||||| ||||||| ||| | |||| | ||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||| ||||||| |
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|
| T |
36940478 |
accagagatatcaatggttttaacttcatgattcttgatctcttttttaggcacagtgacagtgagaatgccattctccattgcagctttcatttgatcc |
36940577 |
T |
|
| Q |
177 |
attttcgcattctctggtaatct |
199 |
Q |
| |
|
||||| |||||||| || ||||| |
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| T |
36940578 |
attttagcattctcaggcaatct |
36940600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 36935858 - 36935974
Alignment:
| Q |
75 |
taaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctcca-ttgcagctttcacttga |
173 |
Q |
| |
|
||||||||||| ||||||| || | |||||||||||| | |||||| | || || || |||||||||||||||||||||| ||||||||||||||||| |
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| T |
36935858 |
taaccagagatatcaatggtcttcacttcaggcttcttaacctcttcttgtggcacggtaacagtgagaacaccattctccaattgcagctttcacttga |
36935957 |
T |
|
| Q |
174 |
tccattttcgcattctc |
190 |
Q |
| |
|
|||||||| |||||||| |
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|
| T |
36935958 |
tccattttagcattctc |
36935974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 36296508 - 36296566
Alignment:
| Q |
129 |
acagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcatt |
187 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| |||||||| || ||||| |
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| T |
36296508 |
acagttacagtgagaacaccattctccattgcagctttcacctgatccatcttggcatt |
36296566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 24040736 - 24040862
Alignment:
| Q |
74 |
ttaaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttga |
173 |
Q |
| |
|
|||||||||||| ||||||| || | || ||||||||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
24040736 |
ttaaccagagatatcaatggtcttcacttgaggcttcttaacttcttccttagggacagtgacagtgagaataccattctccattgcagctttcacttga |
24040835 |
T |
|
| Q |
174 |
tccattttcgcattctctggtaatcta |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
24040836 |
tccattttcgcattctctggtaatcta |
24040862 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 76 - 187
Target Start/End: Original strand, 24014181 - 24014292
Alignment:
| Q |
76 |
aaccagagatttcaatggctttgatttcaggcttcttgatctcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatc |
175 |
Q |
| |
|
||||||||||||| |||| || | ||||| ||||| | ||||| || || ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24014181 |
aaccagagatttcgatggacttaacatcaggtttcttaacttcttcttttggaacagtaacagtgagaacaccattctccattgcagctttcacttgatc |
24014280 |
T |
|
| Q |
176 |
cattttcgcatt |
187 |
Q |
| |
|
|||||||||||| |
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|
| T |
24014281 |
cattttcgcatt |
24014292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 117 - 190
Target Start/End: Complemental strand, 34919235 - 34919162
Alignment:
| Q |
117 |
tcttccttagggacagtgacagtgagaacaccattctccattgcagctttcacttgatccattttcgcattctc |
190 |
Q |
| |
|
||||||||||| ||||| ||||| ||||| ||||||||||| ||||||| || ||||||||||| ||||||| |
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| T |
34919235 |
tcttccttaggaacagtaacagtaagaaccccattctccataccagctttaacctgatccattttaacattctc |
34919162 |
T |
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