View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_5 (Length: 570)
Name: NF17698_high_5
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 486; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 486; E-Value: 0
Query Start/End: Original strand, 19 - 559
Target Start/End: Original strand, 49684438 - 49684981
Alignment:
| Q |
19 |
aaaactggatactgaacttcaaaatttatatattagcatattccttaactatgttttctccaattgcataattaaagttgttaatattcatatttagcca |
118 |
Q |
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| T |
49684438 |
aaaactggatactgaacttcgaaatttacatattagcatattccttaactatgttttctctaattgcataattaaagttgttaatattcatatttagcca |
49684537 |
T |
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| Q |
119 |
cagcagaattacaactatgtactacattatcaaattttatttcagttcattctcttataaatagtcctagtagtaattgagttacaaggaattagaatta |
218 |
Q |
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| T |
49684538 |
cagcagaattacaactatgtactacattatcaaattttatttcagttcattctcgtataaatagtcctagtagtaatttagttacaaggaattagaatta |
49684637 |
T |
|
| Q |
219 |
cctgagcatagttcaacatttgtgacttgcgaagaatgcacccattctgcttgttcgtaatagcaaaggaaagtcgtccctagagg---agaagaggtaa |
315 |
Q |
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| T |
49684638 |
cctgagcatagttcaacatttgtgacttgcgaagaatgcatccattctgcctgttcgtaatagcaaaggaaagtcgtccctagaggagaagaagaggtaa |
49684737 |
T |
|
| Q |
316 |
agggtagctctatgttcagcagtggtgctgttggtgatgataatagctttagggttttggctttaacttaatttgatcagaaactgaaactactggaatt |
415 |
Q |
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| T |
49684738 |
agggtagctctatgttcagcagtggtgctgttggtgatgataatagctttagggttttggctttaacttaatttgatcagaaactgaaactactggaatt |
49684837 |
T |
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| Q |
416 |
agttttaaaagatgaaaaacgatatacatagttttgcactttcttaataagaaaagaaaaacaacgcattactgaacaagttcaagctgttgaattgcta |
515 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |
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| T |
49684838 |
agttttaaaagatgaaaaacgatatacatagttttgcactttcttaataagaaaagaaaaacaatgcattactgaacaagttcaagccgttgaattgcta |
49684937 |
T |
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| Q |
516 |
gtacttgttggttatttggcggttcattttcggttaaatatatt |
559 |
Q |
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| T |
49684938 |
gtacttgttgattatttggcggttctttttcggttaaatatatt |
49684981 |
T |
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