View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_high_7 (Length: 507)
Name: NF17698_high_7
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 161; Significance: 1e-85; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 237 - 454
Target Start/End: Complemental strand, 2174099 - 2173890
Alignment:
| Q |
237 |
caaatacaattttctagcccatcctttcgaaagacccctcgcctcgccaagttcaatcaatcttgttggtaaggaatccaacaattatttcaattnnnnn |
336 |
Q |
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| T |
2174099 |
caaatacaattttctagcccatcctttcgaaagacccctcgcctcgccaagttcaatcaatcttgttggtaaggaatccaacaattatttcaa------- |
2174007 |
T |
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| Q |
337 |
nnttactacctttgatgggggcatggcttcccgcaattgagccaagagctcccaa--ccgcccaccaaagaaggagagaagaagttcctacaaagatgaa |
434 |
Q |
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| T |
2174006 |
--ttactacctttgat-ggggcatggcttcccgcaattgagccaagagctccctaccccccccaccaaagaaggagagaagaagttcctacaaagatgaa |
2173910 |
T |
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| Q |
435 |
tgtagattgattttaccaaa |
454 |
Q |
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| T |
2173909 |
tgtagattgattttaccaaa |
2173890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 73 - 210
Target Start/End: Complemental strand, 2174679 - 2174542
Alignment:
| Q |
73 |
ctccagtatgagtgaggaacaccttggtttcgatagccgtcacaaatgattcaaaatcatttcaactcaaacttcctatactttagtgttttaatagcaa |
172 |
Q |
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| T |
2174679 |
ctccagtatgagtgaggaacaccttggtttcgatagcggtcaccaatgattcaaaatcttttcaactcaaacttcctatactttagtgttttaatagcaa |
2174580 |
T |
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| Q |
173 |
gatttattttattagaaaaggagaaataaaagtgatac |
210 |
Q |
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| T |
2174579 |
gatagattttattagaaaaggagaaataaaagtgatac |
2174542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 19 - 77
Target Start/End: Complemental strand, 2175400 - 2175342
Alignment:
| Q |
19 |
aaatgggctgtttgtttaccttaccttgtctctgccttaagctgatcaatgtttctcca |
77 |
Q |
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| T |
2175400 |
aaatgggctgtttgtttaccttaccttgtctctgccttaagctgatcaatgtttctcca |
2175342 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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