View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_1 (Length: 833)
Name: NF17698_low_1
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 595; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 595; E-Value: 0
Query Start/End: Original strand, 4 - 817
Target Start/End: Original strand, 28497199 - 28498013
Alignment:
| Q |
4 |
ggggggtagatgggcaaaggtggcattggagaaggtgtatttttgcttcggagggagagcagttgggctagcgtgtttctcttttagnnnnnnnnnnnnn |
103 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28497199 |
ggggggtagatgggcaaaggtggcgttggagaaggtgtatttttgcttcggagggagagcagttgggctagcgtgtttctcttttagttttttttttttt |
28497298 |
T |
|
| Q |
104 |
nngcaagattatgttgtggataaatgagattgaactcttaactctggtgatggttatttggtaaaggatggttatcaaatcatcacgcaaactaaacaat |
203 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||||||||||||||||||| ||||| |
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| T |
28497299 |
t-gcaagattaatttgtggataaatgagattgaactcttaactccggtgatggttacttgataaaggatggttatcaaatcatcacgcaaactgaacaac |
28497397 |
T |
|
| Q |
204 |
ctcataatgatannnnnnnnn--ggagtgactaaaaaagtagtgtcnnnnnnntttgtccaataaaattaaagactatgtattatttcactcataaaaca |
301 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28497398 |
ctcataatgatatatatttttttggagtgactaaaaaagtagtgtcaaaaaaatttgtccaataaaattaaagactatgtattatttcactcataaaaca |
28497497 |
T |
|
| Q |
302 |
gttctagtagttttatttggtttggttttattagctcatgtccatttgtaaccctaacagttgctaattgaaaccaaatgattgctctaatagacatcat |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||||||||||| | |
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| T |
28497498 |
gttctagtagttttatttggtttggttttattagctcatgtccatttgtaatcctaacagttgctaaatgaaaccaaataattgctctaatagacatcct |
28497597 |
T |
|
| Q |
402 |
tcatatgtaaactaaaattttgtgaaaattttggtgaggctctagccacacttatgcttagagtagattcacccatgccaacaaaagataatttacctcg |
501 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28497598 |
tcatatgtaaactaaaattttgtgataattttggtgaggctctagccacacttaggcttagagtagattcacccatgccaacaaaagataatttacctcg |
28497697 |
T |
|
| Q |
502 |
tcgtgaagtgttgcttgtagtttcattgttgtgctctagagggtgcgataaggaggaataaattaatcatcttttccttggatgcgacttcttcggtacc |
601 |
Q |
| |
|
||||||||| |||||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |
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|
| T |
28497698 |
tcgtgaagtattgcttgtgggttcgttgttgtgctctagagggtgcgataaggaggaataaattaatcatctttttcttggatgcgacttctttggtagt |
28497797 |
T |
|
| Q |
602 |
atttggcatcttgttttttggtggttgataatttacatgatttctccctctgatgttggcaagcacgctttgcaattcagtggctcacatgtgttcagaa |
701 |
Q |
| |
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||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| |
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| T |
28497798 |
atttgacatcttgttttttgatggttgataatttacatggtttctccctctgatgttggcaagcacgctttgcaattcaatggctcacgtgtgttcagaa |
28497897 |
T |
|
| Q |
702 |
aggatatttgttattggtttcacgaaatctgattggcttgtatctagattatttgaaaggagcataatgatcatattttttgcaactaagaattaagctt |
801 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28497898 |
aggatatttgttattggtttcacgaaatctggttggcttgtatctagattatttgaaaggagcataatgatcatattttttgcaactaagaattaagctt |
28497997 |
T |
|
| Q |
802 |
cattgttggtggttga |
817 |
Q |
| |
|
|||||||||||||||| |
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|
| T |
28497998 |
cattgttggtggttga |
28498013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 3e-47
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 28496451 - 28496663
Alignment:
| Q |
1 |
tttggggggtagatgggcaaaggtggcattggagaaggtgtatttttgcttcggagggagagcagttgggctagcgtgtttctcttttagnnnnnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||||||| | ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |
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| T |
28496451 |
tttggggggtagatgggcaaaggtgtcgttggagaaggtgtatgtttgcttcggagaaagagcagttgggctagcgtgtttctcgtttag--atatttat |
28496548 |
T |
|
| Q |
101 |
nnnnngcaagattatgttgtggataaatgagattgaactcttaactctggtgatggttatttggtaaaggatggttatcaaatcatcacgcaaactaaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||| ||| ||||||||| |||||||||||||||||| |||||||||| |||||| | | |
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| T |
28496549 |
tttttgcaagattatgttgtggataaatgagtttggactcttaattctcttgatggttacttggtaaaggatggttataaaatcatcacacaaactgagc |
28496648 |
T |
|
| Q |
201 |
aatctcataatgata |
215 |
Q |
| |
|
|| |||||||||||| |
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|
| T |
28496649 |
aacctcataatgata |
28496663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000008
Query Start/End: Original strand, 259 - 382
Target Start/End: Original strand, 5476199 - 5476323
Alignment:
| Q |
259 |
tccaataaaattaaagactatgtattatttcactcataa-aacagttctagtagttttatttggtttggttttattagctcatgtccatttgtaacccta |
357 |
Q |
| |
|
|||||| |||||||| |||||||| ||||||||||| || || |||| ||||||||||||||| | |||||||||| |||||| |||||||| |||| |
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| T |
5476199 |
tccaatgaaattaaaaactatgtaatatttcactcaaaataatagttttagtagttttatttgaactagttttattagatcatgttcatttgtagtccta |
5476298 |
T |
|
| Q |
358 |
acagttgctaattgaaaccaaatga |
382 |
Q |
| |
|
| | ||||| |||| ||| |||||| |
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|
| T |
5476299 |
ataattgctgattgtaacaaaatga |
5476323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 8323205 - 8323290
Alignment:
| Q |
266 |
aaattaaagactatgtattatttcactcataaaacagttctagtagttttatttggtttggttttattagctcatgtccatttgta |
351 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||| | ||| || |||||||||| | || ||||||||||||||| | |||||||| |
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| T |
8323205 |
aaattaaaaactatgtattatttcactcgaaaagctgttttaatagttttattgaggttagttttattagctcatattcatttgta |
8323290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 306 - 371
Target Start/End: Original strand, 39721531 - 39721596
Alignment:
| Q |
306 |
tagtagttttatttggtttggttttattagctcatgtccatttgtaaccctaacagttgctaattg |
371 |
Q |
| |
|
|||||||||||||||| | ||||||||| ||| || ||||||||||||||||| ||| |||||| |
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|
| T |
39721531 |
tagtagttttatttgggctatttttattagttcaagttcatttgtaaccctaacaattgttaattg |
39721596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 261 - 360
Target Start/End: Complemental strand, 47377713 - 47377616
Alignment:
| Q |
261 |
caataaaattaaagactatgtattatttcactcataa-aacagttctagtagttttatttggtttggttttattagctcatgtccatttgtaaccctaac |
359 |
Q |
| |
|
|||| ||||||||||| || ||||||||| ||| || ||||||| |||||||||||||||| |||||||||||||||||| |||| |||||||||| |
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|
| T |
47377713 |
caattaaattaaagacgat--attatttcattcaaaataacagtt-tagtagttttatttgggcaagttttattagctcatgtctatttataaccctaac |
47377617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 262 - 292
Target Start/End: Original strand, 42059954 - 42059984
Alignment:
| Q |
262 |
aataaaattaaagactatgtattatttcact |
292 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
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|
| T |
42059954 |
aataaaattaaagactatgtattatttcact |
42059984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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