View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_11 (Length: 416)
Name: NF17698_low_11
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 10 - 401
Target Start/End: Complemental strand, 9631424 - 9631035
Alignment:
| Q |
10 |
agatgaacacattaacaagaaaacacgattttttatgtcctttgaaagtatacttatgagaatatgcgtggttctttattttatttatttttcatatata |
109 |
Q |
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| T |
9631424 |
agatgaacacattaacaagaaaacacgattttttatgtcctttgaaagtatgcttatgagaatatgcgtggttctttattttatttatttttcatatata |
9631325 |
T |
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| Q |
110 |
aatgtaatggtgaaaagtaaccgctaacgatatagtagatagtaaattttgtgtaaaataaaaaatagtaaatttggtttagattcgatgttctagtgtt |
209 |
Q |
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| T |
9631324 |
aatgtaatggtgaaaagtaaccgctaacgatatagtagatagtaaattttgtgtaaaataaaaaatagtaaatttggtttagattcgatgttctagtgtt |
9631225 |
T |
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| Q |
210 |
tgtacgataagagtcgtgtttagatgcgcactctttttagatgaatatgatgatttggacggtaaaattggtgtatctagatgtaaagagtcgatatgct |
309 |
Q |
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| T |
9631224 |
tgtacgataagagtcgtgtttagatgcgcactctttttagatgaatatgatgatttggacggtaaaattggtgtatctagatgtaaagagtcgatatgct |
9631125 |
T |
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| Q |
310 |
cnnnnnnngatgatgaatatttagttaaacg-tcaaattgatcatcttaaatagaaccaatcatctttgatgcaccttttgtattaacttttt |
401 |
Q |
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| T |
9631124 |
caaaaa---aagatgaatatttagttaaacgttcaaattgatcatcttaaattgaaccaatcatctttgatgcaccttttgtattaacttttt |
9631035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 63 - 249
Target Start/End: Complemental strand, 9628096 - 9627914
Alignment:
| Q |
63 |
ttatgagaatatgcgtggttctttattttatttatttttcatatataaatgtaatggtgaaaagtaaccgctaacgatatagtagatagtaaattttgtg |
162 |
Q |
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| T |
9628096 |
ttatgagaatatatatagttcttcattttatttattttgcatatataaatgtaatggtgaaa--------ctaacgatatggtagatagtaaattttgtg |
9628005 |
T |
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| Q |
163 |
taa----aataaaaaatagtaaatttggtttagattcgatgttctagtgtttgtacgataagagtcgtgtttagatgcgcactctttttag |
249 |
Q |
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| T |
9628004 |
taacaaaaataaaagatagtaaactttgtttagactcgatgttctagtgtttgtacggttggagtcgtgtttaagtgcacactctttttag |
9627914 |
T |
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