View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_12 (Length: 386)
Name: NF17698_low_12
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 11168229 - 11168383
Alignment:
| Q |
217 |
cacaaatggaatcacttagagatgtacataccagtatttaaatttgattgaggcattatttcttctattggtgtatcatcctccataaatatgtcatcat |
316 |
Q |
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| T |
11168229 |
cacaaatggaatcacttagagatgtacatactagtatttaaatttgattgaggcattatttcttctattggtgtatcatcctccataaatatgtcatcat |
11168328 |
T |
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| Q |
317 |
ttaaatcaaaaggnnnnnnngttgatgaagaagtttgaagcattgaagtagaagt |
371 |
Q |
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| T |
11168329 |
ttaaatcaaaaggaaaaagagttgatgaagaagtttgaagcattgaagtagaagt |
11168383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 11168093 - 11168185
Alignment:
| Q |
80 |
gaacgtaggatcaatggagattcatttagagtattatatgttcaatggagattcatgaaagcattgctaaatactgtgtacataaacatgaag |
172 |
Q |
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| T |
11168093 |
gaacgtaggatcaatggagattcatttagagtattatatgttcaatggagattcatgaaagcattgctaaatactctgtacataaacatgaag |
11168185 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 130; Significance: 3e-67; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 217 - 371
Target Start/End: Original strand, 36914916 - 36915070
Alignment:
| Q |
217 |
cacaaatggaatcacttagagatgtacataccagtatttaaatttgattgaggcattatttcttctattggtgtatcatcctccataaatatgtcatcat |
316 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36914916 |
cacaaatggaatcacttagagatgtacatactagtatttaaatttgattgaggcattatttcttctattggtgtatcatcctccataaatatgtcatcat |
36915015 |
T |
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| Q |
317 |
ttaaatcaaaaggnnnnnnngttgatgaagaagtttgaagcattgaagtagaagt |
371 |
Q |
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| T |
36915016 |
ttaaatcaaaaggaaaaagagttgatgaagaagtttgaagcattgaagtagaagt |
36915070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 80 - 172
Target Start/End: Original strand, 36914780 - 36914872
Alignment:
| Q |
80 |
gaacgtaggatcaatggagattcatttagagtattatatgttcaatggagattcatgaaagcattgctaaatactgtgtacataaacatgaag |
172 |
Q |
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| T |
36914780 |
gaacgtaggatcaatggagattcatttagagtattatatgttcaatggagattcatgaaagcattgctaaatactctgtacataaacatgaag |
36914872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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