View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_13 (Length: 348)
Name: NF17698_low_13
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 24 - 332
Target Start/End: Complemental strand, 51839983 - 51839675
Alignment:
| Q |
24 |
ttctatctaatattggcaagcatgctgcctagtttgccgtccgtcatctctttaggaaagatattcaaatttgtcttcaataatttaatcgtctagtagt |
123 |
Q |
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| T |
51839983 |
ttctatctaatattggcaagcatgctgcctagtttgccgacagtcatctctttaggaaggatattcacatttgtcttcaataatttaatcgtctagtagt |
51839884 |
T |
|
| Q |
124 |
tgaattatttggaaggaacacaactttcagatgtttcaaaacaaagaatcagccatcgttgatatagttgacaatgtgaaatttcattcttgtggagatg |
223 |
Q |
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| T |
51839883 |
tgaattatttggaaggaacacaactttcagatgtttcaaaacaaagaatcagccatcgttgatatagttgacaatgtgaaatttcattcttgtggagatg |
51839784 |
T |
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| Q |
224 |
tttgtttagagtatttcatcctgtaatgtcgttatctgcttgttgatgattcggttttgtttgccatttttcaagtctttatgctcattttaagttaagc |
323 |
Q |
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| T |
51839783 |
tttgtttagagtatttcatcctgtaatgtcgttatctgcttgttgatgatttggttttgtttgccatttttcaagtctttatgctcattttaagttaagc |
51839684 |
T |
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| Q |
324 |
acatcttat |
332 |
Q |
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||||||||| |
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| T |
51839683 |
acatcttat |
51839675 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 173
Target Start/End: Complemental strand, 43941395 - 43941349
Alignment:
| Q |
127 |
attatttggaaggaacacaactttcagatgtttcaaaacaaagaatc |
173 |
Q |
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| T |
43941395 |
attatttgaaaggaacacaacattaagatctttcaaaacaaagaatc |
43941349 |
T |
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