View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_17 (Length: 335)
Name: NF17698_low_17
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_17 |
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Alignment Details
Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 31294313 - 31294256
Alignment:
| Q |
1 |
gtatcaagaactttcatataatcaaagacctttttataccatgaatatcaaatccttc |
58 |
Q |
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| T |
31294313 |
gtatcaagaactttcatataatcaaagacctttttataccatgaatatcaaatccttc |
31294256 |
T |
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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 244 - 278
Target Start/End: Original strand, 27338302 - 27338336
Alignment:
| Q |
244 |
caaacagttcaattttcaatatattaaatacacaa |
278 |
Q |
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| T |
27338302 |
caaacagttcaatttccaatatattaaatacacaa |
27338336 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 234
Target Start/End: Complemental strand, 31624777 - 31624736
Alignment:
| Q |
193 |
cagaggtcaaattcctcgaactcataaccgtacaacaattat |
234 |
Q |
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| T |
31624777 |
cagaggtcaaattcctcgaactcataaccttacaacaattat |
31624736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 105
Target Start/End: Complemental strand, 31620665 - 31620633
Alignment:
| Q |
73 |
aattcacggtagattagactattgattgcttag |
105 |
Q |
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| T |
31620665 |
aattcacggtagattagactattgattgcttag |
31620633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 194169 - 194217
Alignment:
| Q |
280 |
aaagagaaaaagataatataatctgttaaaaactaattacgtactcccc |
328 |
Q |
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| T |
194169 |
aaagagaaaaagaaaatatagtcggttcaaaacttattacgtactcccc |
194217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 280 - 328
Target Start/End: Original strand, 309006 - 309054
Alignment:
| Q |
280 |
aaagagaaaaagataatataatctgttaaaaactaattacgtactcccc |
328 |
Q |
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||||||||||||| |||||| || ||| |||||| |||||||||||||| |
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| T |
309006 |
aaagagaaaaagaaaatatagtcggttcaaaacttattacgtactcccc |
309054 |
T |
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