View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_18 (Length: 331)
Name: NF17698_low_18
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 1 - 206
Target Start/End: Original strand, 34721353 - 34721565
Alignment:
| Q |
1 |
tcctttttcccaattcaactgaatttatcattactattctgttgccgccgataacataaa-------caagctgttgttttaaagaaacttggccattgt |
93 |
Q |
| |
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| T |
34721353 |
tcctttttcccaattcaactgaatttatcattactcttctgttgccgccgataacataaacattaaacaagctgttgttgtaaagaaacttggccattgt |
34721452 |
T |
|
| Q |
94 |
cttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataagtggatttagcaatggttgttttaccgat |
193 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34721453 |
cttgttcccaaacttccccgacatttaggaggaaactcccttcgttaaaagagtgacggagtttattataagtggatttagcaatggttgttttaccgat |
34721552 |
T |
|
| Q |
194 |
ccctccctcgcca |
206 |
Q |
| |
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|||||||| |||| |
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| T |
34721553 |
ccctcccttgcca |
34721565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 87 - 316
Target Start/End: Original strand, 34727760 - 34727989
Alignment:
| Q |
87 |
ccattgtcttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataagtggatttagcaatggttgttt |
186 |
Q |
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||||| ||||||||||||||||||| |||||||||||||||| || | |||| |||||| | ||||||||||| | ||||||||| ||||||| |
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| T |
34727760 |
ccattatcttgttcccaaacttccctgacatttaggaggaaactcttcgcctcaaaatcgtgacgaattttattataagcagctttagcaattgttgttt |
34727859 |
T |
|
| Q |
187 |
taccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatcttgtgcacgagattctacccc |
286 |
Q |
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| T |
34727860 |
tgccgatccctcccatgccccatattccaagcagtaaagggtcttttgattcttgattgttcagtagttgaataacatcttgaacacgagaatctacccc |
34727959 |
T |
|
| Q |
287 |
taccggatggtctgcaacgaataagtctgt |
316 |
Q |
| |
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|| |||||||||||||||||||||||||| |
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| T |
34727960 |
cactggatggtctgcaacgaataagtctgt |
34727989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 67 - 316
Target Start/End: Complemental strand, 18928986 - 18928737
Alignment:
| Q |
67 |
gttgttttaaagaaacttggccattgtcttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataagt |
166 |
Q |
| |
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|||||| || |||||| || ||||| || ||||||||| |||||| |||||||||||||||| || | | |||| |||||| | ||||||||||| |
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| T |
18928986 |
gttgttgtagagaaacctgcccattatcgtgttcccaatcttccctgacatttaggaggaaactctttgcatcaaaatcgtgacgaattttattataagc |
18928887 |
T |
|
| Q |
167 |
ggatttagcaatggttgttttaccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatct |
266 |
Q |
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| T |
18928886 |
agctttagcaattgttgttttgccgatccctcccataccccatattccaagcagtaaagggtcttttgattcgtgacagttcaatagttgaacaacatct |
18928787 |
T |
|
| Q |
267 |
tgtgcacgagattctacccctaccggatggtctgcaacgaataagtctgt |
316 |
Q |
| |
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|| ||||||| |||||||| || |||||||||||||||||||| ||||| |
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| T |
18928786 |
tgaacacgagaatctacccccactggatggtctgcaacgaataattctgt |
18928737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 312
Target Start/End: Original strand, 34715797 - 34716114
Alignment:
| Q |
1 |
tcctttttcccaattcaactgaatttatcattactattctgttgccgcc---gataacataaacaagctgttgttttaaagaaacttggccattgtcttg |
97 |
Q |
| |
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|||||||||| ||||||||| ||||||| ||| | ||||| ||| || ||||||| ||| ||| |||| || ||||||||||| |||||| ||||| |
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| T |
34715797 |
tcctttttccggattcaactgtatttatcgttattcttctgctgctgcttctgataacagaaataagttgtttttgtaaagaaacttcgccattatcttg |
34715896 |
T |
|
| Q |
98 |
ttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagt---gacggagtttattataagtggatttagcaatggttgttttaccgatc |
194 |
Q |
| |
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|| ||||||||| |||||||||| |||||| ||| | | |||| || || ||| || ||||||| | ||| ||||| ||||||||||||||| |
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| T |
34715897 |
tttccaaacttcaccgacatttaagaggaagctccttgcctcaaaatggtggcgatggatttcattataaactgctttggcaattgttgttttaccgatc |
34715996 |
T |
|
| Q |
195 |
cctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatcttgtgcacgagattctacccctaccggat |
294 |
Q |
| |
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||||| |||| |||||||||||||||| |||| || |||| ||| | | | ||| | |||||| |||||| |||||||||| ||||| || |||| |
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| T |
34715997 |
cctcctccgccccatatcccaagcagtacaggatcttctgattgtcgggattttagtagttgaataacctcttgtacacgagattccacccccactggat |
34716096 |
T |
|
| Q |
295 |
ggtctgcaacgaataagt |
312 |
Q |
| |
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|||| ||||| ||||||| |
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| T |
34716097 |
ggtccgcaacaaataagt |
34716114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 155 - 315
Target Start/End: Original strand, 34717711 - 34717871
Alignment:
| Q |
155 |
tttattataagtggatttagcaatggttgttttaccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaatagg |
254 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | ||||||||| ||| |||||||||| |||||||| || ||| |||| ||||| || || |
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| T |
34717711 |
tttattataaccggatttagcaatggttgttttgtcaatccctcccatgcctcatatcccaatcagtagagagtcttttgattgttggctgttcagaagt |
34717810 |
T |
|
| Q |
255 |
ttaataacatcttgtgcacgagattctacccctaccggatggtctgcaacgaataagtctg |
315 |
Q |
| |
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| ||||||||||||| ||| |||||| ||| | || |||||||| |||| |||||||||| |
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| T |
34717811 |
taaataacatcttgtacacaagattcaacctcgactggatggtccacaacaaataagtctg |
34717871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 128
Target Start/End: Original strand, 34730898 - 34730959
Alignment:
| Q |
67 |
gttgttttaaagaaacttggccattgtcttgttcccaaacttccccgacatttaggaggaaa |
128 |
Q |
| |
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|||||| || ||||||| |||||| ||||||||||||||||||| |||||||||||||||| |
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| T |
34730898 |
gttgttgtagagaaactatgccattatcttgttcccaaacttccctgacatttaggaggaaa |
34730959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 18924081 - 18924027
Alignment:
| Q |
66 |
tgttgttttaaagaaacttggccattgtcttgttcccaaacttccccgacattta |
120 |
Q |
| |
|
||||||| ||||||||||| |||||| |||||||||||||||| || |||||||| |
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| T |
18924081 |
tgttgttgtaaagaaacttcgccattatcttgttcccaaacttgccggacattta |
18924027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 316
Target Start/End: Original strand, 34735496 - 34735746
Alignment:
| Q |
66 |
tgttgttttaaagaaacttggccattgtcttgttcccaaacttccccgacatttaggaggaaattcccttagttaaaagagtgacggagtttattataag |
165 |
Q |
| |
|
||||||| || ||||||| |||||| ||||||||||| ||||||| ||||||| |||||||| || | |||| |||| | | ||||||||||| |
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|
| T |
34735496 |
tgttgttgtagagaaactacgccattatcttgttcccagacttccctgacatttgggaggaaactcttcgcctcaaaatcgtgatgaattttattataag |
34735595 |
T |
|
| Q |
166 |
tggatttagcaatggttgttttaccgatccctccctcgccacatatcccaagcagtagaggacctgctgactgtttgctgtacaataggttaataacatc |
265 |
Q |
| |
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| ||||||||| |||||||| |||||||||||| ||| |||| || ||||||| ||| | ||| | || |||| |||||| | ||| | ||| |
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| T |
34735596 |
cagctttagcaattgttgttttgccgatccctcccatgccccatactccgagcagtaaaggggattttgattcttgactgttcaatagttgaatgatatc |
34735695 |
T |
|
| Q |
266 |
ttgtgcacgagattctacccctaccggatggtctgcaacgaataagtctgt |
316 |
Q |
| |
|
||| ||||||| | |||||| ||||||||||| ||||| ||||||||||| |
|
|
| T |
34735696 |
ttgaacacgagactttacccccaccggatggtccgcaacaaataagtctgt |
34735746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 257 - 312
Target Start/End: Complemental strand, 18923890 - 18923835
Alignment:
| Q |
257 |
aataacatcttgtgcacgagattctacccctaccggatggtctgcaacgaataagt |
312 |
Q |
| |
|
|||||| |||||| |||||||||| ||||| || |||||||| ||||||||||||| |
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|
| T |
18923890 |
aataacctcttgtacacgagattcaacccccacaggatggtccgcaacgaataagt |
18923835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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