View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_19 (Length: 329)
Name: NF17698_low_19
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 101; Significance: 5e-50; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 12314431 - 12314331
Alignment:
| Q |
1 |
ttactttccgaacccagcaaatcatccaatgttatattatcatacaatataacttgattcaaaaagtattcacgaagaaaaacaaaaattgcaacatctt |
100 |
Q |
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| T |
12314431 |
ttactttccgaacccagcaaatcatccaatgttatattatcatacaatataacttgattcaaaaagtattcacgaagaaaaacaaaaattgcaacatctt |
12314332 |
T |
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| Q |
101 |
a |
101 |
Q |
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| T |
12314331 |
a |
12314331 |
T |
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Target: chr5; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 12313160 - 12313080
Alignment:
| Q |
139 |
aatcaacacgtcatactattagcttatacactttcctcttcatgatcattgggatgcataacaatatgcacataagagaaa |
219 |
Q |
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| T |
12313160 |
aatcaacacgtcatactattagcttatacacttttctcttcatgatcattgggatgcataacaatatgcacataagagaaa |
12313080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 12313052 - 12312981
Alignment:
| Q |
247 |
gccaacatttcatatgtgcgggtatggatccccaattttcttttcatgtaatcaaatatcataccacttcat |
318 |
Q |
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| T |
12313052 |
gccaacatttcatatgtgcgagtatggatccccaattttcttttcatgtaatcaaatatcataccacttcat |
12312981 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 12313229 - 12313187
Alignment:
| Q |
98 |
cttaatgtacttaaa-gataaagttcttttgatagtcgtcata |
139 |
Q |
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| T |
12313229 |
cttaatgtacttaaaagataaaattcttttgatagtcgtcata |
12313187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 90
Target Start/End: Original strand, 26835304 - 26835385
Alignment:
| Q |
9 |
cgaacccagcaaatcatccaatgttatattatcatacaatataacttgattcaaaaagtattcacgaagaaaaacaaaaatt |
90 |
Q |
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|||||| | |||| |||| ||||||| ||| |||||||||||||||||||||| || || | |||||||||||| ||||| |
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| T |
26835304 |
cgaacctaacaaagcatctaatgttacattgtcatacaatataacttgattcactaactacttgcgaagaaaaacataaatt |
26835385 |
T |
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