View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17698_low_21 (Length: 320)

Name: NF17698_low_21
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17698_low_21
NF17698_low_21
[»] chr8 (2 HSPs)
chr8 (13-320)||(15349061-15349368)
chr8 (109-270)||(4962191-4962356)
[»] chr4 (25 HSPs)
chr4 (20-320)||(48898915-48899218)
chr4 (13-204)||(45365796-45365987)
chr4 (93-279)||(7773481-7773670)
chr4 (76-201)||(48870857-48870982)
chr4 (76-201)||(48876161-48876286)
chr4 (76-201)||(48886543-48886668)
chr4 (66-197)||(7790381-7790512)
chr4 (67-137)||(48864396-48864466)
chr4 (14-137)||(45371651-45371774)
chr4 (66-149)||(48156058-48156141)
chr4 (76-149)||(7765991-7766064)
chr4 (76-197)||(7771696-7771817)
chr4 (76-137)||(45384531-45384592)
chr4 (66-147)||(49043797-49043878)
chr4 (76-148)||(7878733-7878805)
chr4 (77-137)||(49038518-49038578)
chr4 (82-137)||(48147358-48147413)
chr4 (76-146)||(48853033-48853103)
chr4 (109-194)||(7237415-7237500)
chr4 (76-149)||(7786813-7786886)
chr4 (76-137)||(7908663-7908724)
chr4 (106-139)||(48903314-48903347)
chr4 (64-147)||(50666666-50666749)
chr4 (76-137)||(7813838-7813899)
chr4 (106-146)||(48861640-48861680)
[»] chr3 (3 HSPs)
chr3 (41-203)||(47451504-47451666)
chr3 (80-137)||(11024146-11024203)
chr3 (92-137)||(11005583-11005628)
[»] chr5 (5 HSPs)
chr5 (93-203)||(9120058-9120168)
chr5 (76-137)||(42561972-42562033)
chr5 (106-157)||(179399-179450)
chr5 (76-137)||(29688490-29688551)
chr5 (79-137)||(29712083-29712141)
[»] chr1 (2 HSPs)
chr1 (93-137)||(24310577-24310621)
chr1 (77-144)||(24416132-24416199)
[»] chr6 (2 HSPs)
chr6 (226-281)||(21979420-21979475)
chr6 (106-134)||(21979297-21979325)
[»] chr7 (1 HSPs)
chr7 (76-146)||(48884176-48884246)


Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 15349368 - 15349061
Alignment:
Q  13 aatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttg 112  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349368 aatatcaccactctttgtacggcacaaagggtaaaagtacagagttggatcatcatcaatattaagaacaagaatctttgtccaagaagagttcactttg 15349269  T
Q  113 tattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcat 212  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349268 tattctttcatcacccatatttcaaagctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcat 15349169  T
Q  213 catgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaaggaaaatcacgatgaaa 312  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349168 catgttcaaaatcatctggaggaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaaggaaaatcacgatgaaa 15349069  T
Q  313 agccaacc 320  Q
    ||||||||    
T  15349068 agccaacc 15349061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 109 - 270
Target Start/End: Original strand, 4962191 - 4962356
Alignment:
Q  109 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaa-tcac- 206  Q
    ||||||||||||||||||||||||||||| ||||  |||  |||||||| |   ||| ||||| | |||||| ||||| |||||||||||| || | ||     
T  4962191 tttgtattctttcatcacccatatttcaactctacaattgcgataatccatgccccatagactgagaaattctccaaatacccacaaaccataacttaca 4962290  T
Q  207 --cagcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaa 270  Q
      |||  ||||  ||||||||||  ||| |||||||||| |||| |||||||||  ||||||||||    
T  4962291 gacaggttcatagtcaaaatcattgggaagaggcatctctaacaatttcctttccattaaatcaaa 4962356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 20 - 320
Target Start/End: Complemental strand, 48899218 - 48898915
Alignment:
Q  20 ccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctt 119  Q
    ||||| ||||||| |||||| ||||||||||||| ||| ||| |  ||||||||  |||||||||| ||  ||||||||| || || ||||| |||||||    
T  48899218 ccactttttgtacagcacaatgggtaaaagtacatagtgggaatgccatcaataggaagaacaagagtcactgtccaagaggattttactttatattctt 48899119  T
Q  120 tcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatcaccagcatcatgttc 219  Q
    |||||||||||||||||| | ||||||||| |||||  | || ||| | ||| ||||| || |||||||||||||||||||||||   || |  ||||||    
T  48899118 tcatcacccatatttcaactgtatcattagcataatttgcagcccatatactgaaaaaatctccaaagacccacaaaccacaatcctgaggaatatgttc 48899019  T
Q  220 aaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataaagttatcacgccaagga---aaatcacgatgaaaagcc 316  Q
     |||||||||||| ||| |||||| ||||||||||||||  |||||||||| |||||||| |  ||||||  ||| |||   ||||||||||||||||||    
T  48899018 caaatcatctggaggagacatctctaacagtttcctttccgttaaatcaaaggcaacaatgacattatcataccatggatggaaatcacgatgaaaagcc 48898919  T
Q  317 aacc 320  Q
    ||||    
T  48898918 aacc 48898915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 45365796 - 45365987
Alignment:
Q  13 aatatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttg 112  Q
    ||||||||| || ||||||  ||| |||||| |||||||  |||| ||| |  ||||||||  ||||||  || ||||||||||||| ||   ||||||     
T  45365796 aatatcaccgctttttgtagagcataaaggggaaaagtattgagtgggaatgccatcaataggaagaacgtgagtctttgtccaagacgaacgcacttta 45365895  T
Q  113 tattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaatc 204  Q
    ||||||||||||||||||||||||| | ||||||||  ||||||| ||| ||||| ||| |||||||| ||||| |||||||||||||||||    
T  45365896 tattctttcatcacccatatttcaactgtatcattatcataatccatagcccaaaaactgaaaaattctccaaatacccacaaaccacaatc 45365987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 279
Target Start/End: Original strand, 7773481 - 7773670
Alignment:
Q  93 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 192  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| || |||| ||| ||| | ||||| | |||| ||||| |||||    
T  7773481 tccaagacgaatgcactttgtattctttcatcacccatatttcaactgtatcattagcattatccttagcccatacactaagatattctccaaataccca 7773580  T
Q  193 caaaccacaat-cacca--gcatcatgttcaaaatcatctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaat 279  Q
    ||||||| |||  ||||  |||  ||| | || || || |||| ||||||||||||||| |||||||||  |||||||||| | ||||||    
T  7773581 caaaccagaatgtaccaatgcactatggtgaacattatttggaagaggcatctcaaacaatttcctttccattaaatcaaaggaaacaat 7773670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 48870982 - 48870857
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 175  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48870982 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48870883  T
Q  176 aattcgccaaagacccacaaaccaca 201  Q
    ||||| ||||| ||||||||||||||    
T  48870882 aattccccaaatacccacaaaccaca 48870857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 48876286 - 48876161
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 175  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48876286 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48876187  T
Q  176 aattcgccaaagacccacaaaccaca 201  Q
    ||||| ||||| ||||||||||||||    
T  48876186 aattccccaaatacccacaaaccaca 48876161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 201
Target Start/End: Complemental strand, 48886668 - 48886543
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 175  Q
    |||||||||| ||||||||||||| ||||||||||||||||| ||||||||||| ||||||| | ||| || |  ||||||| |||   | ||||| | |    
T  48886668 aagaacaagagtctttgtccaagacgagttcactttgtattcattcatcacccacatttcaattgtattatcattataatccatagcatatagactgaga 48886569  T
Q  176 aattcgccaaagacccacaaaccaca 201  Q
    ||||| ||||| ||||||||||||||    
T  48886568 aattccccaaatacccacaaaccaca 48886543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 66 - 197
Target Start/End: Complemental strand, 7790512 - 7790381
Alignment:
Q  66 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagacca 165  Q
    ||||||||  |||||||||| | || |||||||| || | |||||||||||||||||||||||||||||||| | ||||||||  ||||||| |||  ||    
T  7790512 catcaatagaaagaacaagagttttagtccaagacgaatgcactttgtattctttcatcacccatatttcaattgtatcattatcataatccttagcgca 7790413  T
Q  166 aagactaaaaaattcgccaaagacccacaaac 197  Q
     | ||| | |||||| ||||| ||||||||||    
T  7790412 taaactgagaaattctccaaatacccacaaac 7790381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 48864466 - 48864396
Alignment:
Q  67 atcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||  ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48864466 atcaataggaagaacaagaatcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48864396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 45371651 - 45371774
Alignment:
Q  14 atatcaccactatttgtacggcacaaagggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgt 113  Q
    |||||||| || |||||||  ||||| ||| |||||||| ||||||||    |||| |||  |||||||| | |||| |||||||| || | ||||||||    
T  45371651 atatcaccgctttttgtacaacacaatggggaaaagtaccgagttggaacgccatcgataggaagaacaaaagtcttagtccaagacgaatgcactttgt 45371750  T
Q  114 attctttcatcacccatatttcaa 137  Q
    |||||||||| |||||||||||||    
T  45371751 attctttcataacccatatttcaa 45371774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 48156058 - 48156141
Alignment:
Q  66 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 149  Q
    ||||||||  ||| |||||| | || ||||||||||| | |||||||||||| ||||||||||||||||||| ||| |||||||    
T  48156058 catcaataggaaggacaagagttttagtccaagaagaatgcactttgtattcgttcatcacccatatttcaactctttcattag 48156141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 7766064 - 7765991
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 149  Q
    |||||||||  |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||||    
T  7766064 aagaacaagtgtcttagtccatgacgaatacactttgtattctttcatcacccatatttcaattgtatcattag 7765991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 197
Target Start/End: Complemental strand, 7771817 - 7771696
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaa 175  Q
    |||||||||| | || ||||| || || | |||||||||||||||||||||||||||| ||| | ||||||||  ||||||| |||  || | ||| | |    
T  7771817 aagaacaagagttttagtccatgacgaatgcactttgtattctttcatcacccatattacaattgtatcattatcataatccttagcgcataaactgaga 7771718  T
Q  176 aattcgccaaagacccacaaac 197  Q
    ||||| ||||| ||||||||||    
T  7771717 aattctccaaatacccacaaac 7771696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 45384531 - 45384592
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||| || ||||||||||||| || | |||||| |||||||||||||||||||||||||    
T  45384531 aagaacacgagtctttgtccaagacgaatgcactttatattctttcatcacccatatttcaa 45384592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 147
Target Start/End: Original strand, 49043797 - 49043878
Alignment:
Q  66 catcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 147  Q
    ||||||||  || ||||||| |||| ||||| || || | |||||||||||||||||||||||||||||||| | |||||||    
T  49043797 catcaatagaaaaaacaagagtcttagtccatgacgaatgcactttgtattctttcatcacccatatttcaactatatcatt 49043878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 76 - 148
Target Start/End: Complemental strand, 7878805 - 7878733
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatta 148  Q
    |||||||||| | ||  ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||    
T  7878805 aagaacaagagttttaatccaagatgaatgcactttgtattctttcatcacccatatttcaactgtatcatta 7878733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 77 - 137
Target Start/End: Original strand, 49038518 - 49038578
Alignment:
Q  77 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||||| |||| |||||||| || |  |||||||||||||||||||||||||||||||    
T  49038518 agaacaagagtcttagtccaagacgaatgaactttgtattctttcatcacccatatttcaa 49038578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 82 - 137
Target Start/End: Original strand, 48147358 - 48147413
Alignment:
Q  82 aagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||| |||| |||||||| || | ||||||||||||||||||||||||||||||||    
T  48147358 aagagtcttagtccaagacgaatgcactttgtattctttcatcacccatatttcaa 48147413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 48853103 - 48853033
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 146  Q
    |||||||||| |||| |||||||| ||   |||||||||||||||||| ||||||||||||| | ||||||    
T  48853103 aagaacaagagtcttagtccaagacgaacgcactttgtattctttcatgacccatatttcaactgtatcat 48853033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 109 - 194
Target Start/End: Original strand, 7237415 - 7237500
Alignment:
Q  109 tttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccaca 194  Q
    ||||||||||||||||||||||||| ||| | ||||||||  |||||||  || ||| ||||| | |||||| ||||| |||||||    
T  7237415 tttgtattctttcatcacccatattacaattgtatcattatcataatcctgagcccatagactgagaaattctccaaatacccaca 7237500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 7786886 - 7786813
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattag 149  Q
    |||||||||| ||||  |||||||  | | ||| |||||||||||||||||||||||||||| | |||||||||    
T  7786886 aagaacaagagtcttattccaagataaatgcacgttgtattctttcatcacccatatttcaattgtatcattag 7786813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 7908724 - 7908663
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||||||||||||||||||    
T  7908724 aagaacaagagttttattccaagatgaatgcactttgtattctttcatcacccatatttcaa 7908663  T

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Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 48903347 - 48903314
Alignment:
Q  106 cactttgtattctttcatcacccatatttcaaat 139  Q
    ||||||||||||||||||||||||||||||||||    
T  48903347 cactttgtattctttcatcacccatatttcaaat 48903314  T

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Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 64 - 147
Target Start/End: Complemental strand, 50666749 - 50666666
Alignment:
Q  64 atcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcatt 147  Q
    ||||||||| | || ||||||| | || |||||||| || | |||||||||||||| ||||||||||| ||||| | |||||||    
T  50666749 atcatcaatgtgaataacaagagttttagtccaagatgaatgcactttgtattcttacatcacccataattcaattgtatcatt 50666666  T

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Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 7813899 - 7813838
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||||| | ||  ||||||| || | ||||||||||||||||| ||||||||||||||    
T  7813899 aagaacaagagttttattccaagacgaatgcactttgtattctttcaacacccatatttcaa 7813838  T

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Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 48861680 - 48861640
Alignment:
Q  106 cactttgtattctttcatcacccatatttcaaatctatcat 146  Q
    ||||||||||||||| || ||||||||||||||| ||||||    
T  48861680 cactttgtattcttttattacccatatttcaaatgtatcat 48861640  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 203
Target Start/End: Original strand, 47451504 - 47451666
Alignment:
Q  41 gggtaaaagtacagagttggattatcatcaatattaagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatc 140  Q
    |||||||||||| |||  ||| |  ||||||||  |||||||||| |||||  |||||| || || ||||||||||||||||||||||||||||||| |     
T  47451504 gggtaaaagtactgagagggaatgccatcaataggaagaacaagagtcttttcccaagacgaattaactttgtattctttcatcacccatatttcaacta 47451603  T
Q  141 tatcattaggataatccgtagaccaaagactaaaaaattcgccaaagacccacaaaccacaat 203  Q
    |||||||| || |||||  |  ||  ||||||| |||||| ||||| ||||||||||||||||    
T  47451604 tatcattatgacaatccagaacccttagactaagaaattctccaaatacccacaaaccacaat 47451666  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 80 - 137
Target Start/End: Original strand, 11024146 - 11024203
Alignment:
Q  80 acaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||| |||| |||||||| || | |||||||||||||||||| |||||||||||||    
T  11024146 acaagagtcttagtccaagacgaatgcactttgtattctttcataacccatatttcaa 11024203  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 137
Target Start/End: Original strand, 11005583 - 11005628
Alignment:
Q  92 gtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||| || | |||||||||||||||||| |||||||||||||    
T  11005583 gtccaagacgaatgcactttgtattctttcataacccatatttcaa 11005628  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 203
Target Start/End: Complemental strand, 9120168 - 9120058
Alignment:
Q  93 tccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcattaggataatccgtagaccaaagactaaaaaattcgccaaagaccca 192  Q
    ||||||| || | |||||||||||||||||||||||||||||||| | ||||||||| | ||||| ||| ||| | ||| | |||||| ||||| |||||    
T  9120168 tccaagaggaatgcactttgtattctttcatcacccatatttcaactgtatcattagcaaaatccatagcccatatactgagaaattctccaaataccca 9120069  T
Q  193 caaaccacaat 203  Q
    || | ||||||    
T  9120068 cacatcacaat 9120058  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 76 - 137
Target Start/End: Original strand, 42561972 - 42562033
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||||||||||| |||||||| || | ||||||||||||||||||||||||||| ||||    
T  42561972 aagaacaagaatcttagtccaagatgaatgcactttgtattctttcatcacccatatatcaa 42562033  T

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Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 157
Target Start/End: Complemental strand, 179450 - 179399
Alignment:
Q  106 cactttgtattctttcatcacccatatttcaaatctatcattaggataatcc 157  Q
    |||||||||||||||||||||||||||||||| | ||||||||  |||||||    
T  179450 cactttgtattctttcatcacccatatttcaactgtatcattatcataatcc 179399  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 137
Target Start/End: Complemental strand, 29688551 - 29688490
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||| ||| ||||||||||||| || | ||| ||||||| ||||||||||||||||||||    
T  29688551 aagaacgagagtctttgtccaagacgattgcacattgtattttttcatcacccatatttcaa 29688490  T

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Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 29712083 - 29712141
Alignment:
Q  79 aacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    ||||||| |||| |||||||||||  |||| ||||||| || |||||||||||||||||    
T  29712083 aacaagagtcttagtccaagaagatgtcacattgtatttttccatcacccatatttcaa 29712141  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 137
Target Start/End: Complemental strand, 24310621 - 24310577
Alignment:
Q  93 tccaagaagagttcactttgtattctttcatcacccatatttcaa 137  Q
    |||||||||| | ||||||||||||||||||||||||||| ||||    
T  24310621 tccaagaagactgcactttgtattctttcatcacccatatatcaa 24310577  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 144
Target Start/End: Complemental strand, 24416199 - 24416132
Alignment:
Q  77 agaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatc 144  Q
    ||||||||| | || |||||||| || | | ||||||||||||||||||||||||| |||| ||||||    
T  24416199 agaacaagagttttagtccaagatgactgccctttgtattctttcatcacccatatatcaactctatc 24416132  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 226 - 281
Target Start/End: Original strand, 21979420 - 21979475
Alignment:
Q  226 atctggatgaggcatctcaaacagtttcctttcgtttaaatcaaatgcaacaataa 281  Q
    ||||||| |||| |||||||| |||||||||||  |||||||||| ||||||||||    
T  21979420 atctggaagagggatctcaaaaagtttcctttctattaaatcaaaggcaacaataa 21979475  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 106 - 134
Target Start/End: Original strand, 21979297 - 21979325
Alignment:
Q  106 cactttgtattctttcatcacccatattt 134  Q
    |||||||||||||||||||||||||||||    
T  21979297 cactttgtattctttcatcacccatattt 21979325  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 48884246 - 48884176
Alignment:
Q  76 aagaacaagaatctttgtccaagaagagttcactttgtattctttcatcacccatatttcaaatctatcat 146  Q
    |||||||||| |||| ||||||||    | |||||||||||||||||||||| ||||||||| | ||||||    
T  48884246 aagaacaagagtcttagtccaagacatatgcactttgtattctttcatcacctatatttcaactttatcat 48884176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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