View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_24 (Length: 293)
Name: NF17698_low_24
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-147; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 11 - 277
Target Start/End: Original strand, 34361136 - 34361402
Alignment:
| Q |
11 |
aaatccagctttcaaaacagcagtgccactcctcatgatcgaatggttagatggaatagtaataaccatctctgtcacattctaaatgtagatggaagtt |
110 |
Q |
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| T |
34361136 |
aaatccagctttcaaaacagcagtgccactcctcatgatcgaatggttagatggaatagtaataaccatctctgtcacattctaaatgtagatggaagtt |
34361235 |
T |
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| Q |
111 |
gttccggtattccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctctggcttctccggtttcatcgcagactctacgga |
210 |
Q |
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| T |
34361236 |
gttccggtattccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctcttgcttctccggtttcatcgcagactctacgga |
34361335 |
T |
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| Q |
211 |
cattttgctcgcagagctcaccgcaatccaccgaggtttcagcatagcttcagacatgggagttaat |
277 |
Q |
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| T |
34361336 |
cattttgctcgcagagctcaccgcaatccaccgaggtttcagcatagcttcagacatgggagttaat |
34361402 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 144; Significance: 9e-76; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 82 - 277
Target Start/End: Complemental strand, 26702067 - 26701872
Alignment:
| Q |
82 |
ctgtcacattctaaatgtagatggaagttgttccggtattccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctctggc |
181 |
Q |
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| T |
26702067 |
ctgtcatattctaaatgtggatgggagttgttccggtactccaactcgcgcaggttatgggggaattattcgaaacagtgtcggcctttacctctctggc |
26701968 |
T |
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| Q |
182 |
ttctccggtttcatcgcagactctacggacattttgctcgcagagctcaccgcaatccaccgaggtttcagcatagcttcagacatgggagttaat |
277 |
Q |
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| T |
26701967 |
ttctccggtttcattgcagactctactgatattttgctcgcagagctcaccgcaattcaccggggtttccgcatagcttcagacatgggagttaat |
26701872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 243
Target Start/End: Complemental strand, 46954531 - 46954409
Alignment:
| Q |
121 |
tccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctctggcttctccggtttcatcgcagactctacggacattttgctc |
220 |
Q |
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| T |
46954531 |
tccaattcgcgcaggttttgggggagttattcgtaacagtgccggtttatacctctctggcttctccggtttcattgcagattccactgacattctgctt |
46954432 |
T |
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| Q |
221 |
gcagagctcaccgcaatccaccg |
243 |
Q |
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| T |
46954431 |
gctgagctctcggcaattcaccg |
46954409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 72; Significance: 9e-33; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 96 - 271
Target Start/End: Original strand, 11052549 - 11052723
Alignment:
| Q |
96 |
atgtagatggaagttgttccggtattccaactcgcgcaggttatggaggaattattcgaaacagtgccggcctatacctctctggcttctccggtttcat |
195 |
Q |
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||||||||| |||||||| |||| ||||||||||||||||| ||| || |||||| ||| |||||||| | |||||||||||||||||||||||||| |
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| T |
11052549 |
atgtagatgagagttgttctggtactccaactcgcgcaggttttgggggg-ttattcaaaatagtgccggtttttacctctctggcttctccggtttcat |
11052647 |
T |
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| Q |
196 |
cgcagactctacggacattttgctcgcagagctcaccgcaatccaccgaggtttcagcatagcttcagacatggga |
271 |
Q |
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| T |
11052648 |
tgcagactctactgatattttgctcgctaagctcaccacaattcaccgggcttttctcatagcttcagacatggga |
11052723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 46 - 243
Target Start/End: Complemental strand, 50234972 - 50234775
Alignment:
| Q |
46 |
tgatcgaatggttagatggaatagtaataaccatctctgtcacattctaaatgtagatggaagttgttccggtattccaactcgcgcaggttatggagga |
145 |
Q |
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|||||| ||||| | |||||| || ||||| |||| ||| || || || ||||| ||||| |||||||| | | ||||| ||| ||||| | ||| ||| |
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| T |
50234972 |
tgatcgtatggtcaaatggaacagcaataatcatcactgccatatccttaatgtggatgggagttgttcatgaactccaattcgtgcaggctttggggga |
50234873 |
T |
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| Q |
146 |
attattcgaaacagtgccggcctatacctctctggcttctccggtttcatcgcagactctacggacattttgctcgcagagctcaccgcaatccaccg |
243 |
Q |
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||||||| |||||||||||| |||||||||||||||||||||||||||| ||||| || || |||||| | || || |||||| | ||||| ||||| |
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| T |
50234872 |
gttattcgtaacagtgccggcttatacctctctggcttctccggtttcattgcagattccactgacattctacttgctgagctctcggcaattcaccg |
50234775 |
T |
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