View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_28 (Length: 261)
Name: NF17698_low_28
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37525986 - 37525745
Alignment:
| Q |
1 |
ggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgca |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37525986 |
ggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgca |
37525887 |
T |
|
| Q |
101 |
tgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggca |
200 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37525886 |
tgcaacatatctatgctctaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggca |
37525787 |
T |
|
| Q |
201 |
aaggaactctctaggattctggttttagtaactcaaccttgt |
242 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
37525786 |
aaggaactctctaggattctggttttagtaactcaaccttgt |
37525745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 37588147 - 37587910
Alignment:
| Q |
1 |
ggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588147 |
ggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgca |
37588048 |
T |
|
| Q |
101 |
tgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37588047 |
tgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggca |
37587948 |
T |
|
| Q |
201 |
aaggaactctctaggattctggttttagtaactcaacc |
238 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
37587947 |
aaggaactctctaggattctggttttagtaactcaacc |
37587910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 37690423 - 37690182
Alignment:
| Q |
1 |
ggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37690423 |
ggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgca |
37690324 |
T |
|
| Q |
101 |
tgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37690323 |
tgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggca |
37690224 |
T |
|
| Q |
201 |
aaggaactctctaggattctggttttagtaactcaaccttgt |
242 |
Q |
| |
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| | |||||||||||||||||||||||||||||||||||||| |
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|
| T |
37690223 |
acgaaactctctaggattctggttttagtaactcaaccttgt |
37690182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 37618719 - 37618480
Alignment:
| Q |
3 |
accaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37618719 |
accaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttgcatg |
37618620 |
T |
|
| Q |
103 |
caacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggcaaa |
202 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37618619 |
caacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacatttgccaataaaaggcaaa |
37618520 |
T |
|
| Q |
203 |
ggaactctctaggattctggttttagtaactcaaccttgt |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
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| T |
37618519 |
ggaactctctaggattttggttttagtaactcaaccttgt |
37618480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 3 - 242
Target Start/End: Complemental strand, 37794487 - 37794248
Alignment:
| Q |
3 |
accaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatg |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
37794487 |
accaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttacaccatgaagcttgcatg |
37794388 |
T |
|
| Q |
103 |
caacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggcaaa |
202 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
37794387 |
caacatatctatgctccaccaagtcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacatttgccaataaaaggcaaa |
37794288 |
T |
|
| Q |
203 |
ggaactctctaggattctggttttagtaactcaaccttgt |
242 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||| |
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| T |
37794287 |
ggaactctctaggattttggttttagtaactcaaccttgt |
37794248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 37787742 - 37787563
Alignment:
| Q |
1 |
ggaccaaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgca |
100 |
Q |
| |
|
||||||||||||||||||||| | |||| |||||||||||||| ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
37787742 |
ggaccaaggtcttgtgaatatgacactctcgaattgcatgcctcatgtaacttagcttcttctcttcagcccattgagcatttaaaccatgaagcttgca |
37787643 |
T |
|
| Q |
101 |
tgcaacatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttattt |
180 |
Q |
| |
|
|| ||||||| ||| |||| || ||||||||||||| ||||||| |||||| |||| |||||| |||||| ||||||| |
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|
| T |
37787642 |
ggcgacatatccatgatccagtaagtcaaaagcctgctagaaatttcttactttaaattactgcagaaaggtgtttattt |
37787563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 5 - 242
Target Start/End: Complemental strand, 14548505 - 14548268
Alignment:
| Q |
5 |
caaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgca |
104 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14548505 |
caaggtcttgtgaatattatactcccgaattgcatgccttatgtaactttgcttcttctcttcactccattgagcatttaaaccatgaagcttgcatgca |
14548406 |
T |
|
| Q |
105 |
acatatctatgctccaccaaatcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaggtatttatttacatttgccaataaaaggcaaagg |
204 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
14548405 |
acatatctatgctctaccaattcaaaagcctgctggaaattttttacttcaaatcactgcaaaaaagtatttatttacatttgccaataaaaggcaaagg |
14548306 |
T |
|
| Q |
205 |
aactctctaggattctggttttagtaactcaaccttgt |
242 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
14548305 |
aactctctaggattctggttttagtaattcaaccttgt |
14548268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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