View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17698_low_3 (Length: 592)
Name: NF17698_low_3
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 521; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 521; E-Value: 0
Query Start/End: Original strand, 18 - 577
Target Start/End: Complemental strand, 47428877 - 47428317
Alignment:
| Q |
18 |
atatataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428877 |
atatataggaaactctaggagggtggcaaatggctttaacaggaaaagcccttgcaggccaaagccaataacaaatagtcaaagcagcacaagaacacaa |
47428778 |
T |
|
| Q |
118 |
aatgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaac-agattaaatctaacatatgaacaaaactatatctcttacg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428777 |
aatgagcattattaaacaagtatagaagaatgagacatatataatgcatgttatgtaacaagattaaatctaacatatgaacaaaactatatctcttacg |
47428678 |
T |
|
| Q |
217 |
cgtatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaagtcctattaaaccagtaagtagaattttggaaggtgaga |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428677 |
cgtatttattattttgatattatagccttagcatttgttactcttcctgtttagttactaaatcctattaaaccagtaagtagaattttggaaggtgaga |
47428578 |
T |
|
| Q |
317 |
aggnnnnnnnntggggaaggcaagcaaatggattagaaaccttcttctagggaaaaaagaagagaacttcaagcagattgatacattctgccccgataat |
416 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428577 |
aggaaaaaaaatggggaaggcaagcaaatggattagaaaccttcttctagggaaaaaagaagagaacttcaagcagattgatacattctgccccgataat |
47428478 |
T |
|
| Q |
417 |
aagaccgcaaacacggttaatagtagtagcagcagtaatagtaataagatggtagtgaagcgcagatggagcttccgaaaactaacaagtggaagatcaa |
516 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428477 |
aagaccgcaaacacggttaatagtagtagcagcagtaatagtaataagatggtagtgaagcgcagatggagcttccgaaaactaacaagtggaagatcaa |
47428378 |
T |
|
| Q |
517 |
cgggcaagttagtagctcataaaatttccaagtcttttgattcagatgactctccaaaatt |
577 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47428377 |
cgggcaaggtagtagctcataaaatttccaagtcttttgattcagatgactctccaaaatt |
47428317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University