View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_30 (Length: 249)
Name: NF17698_low_30
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_30 |
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Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 17 - 201
Target Start/End: Original strand, 39936032 - 39936216
Alignment:
| Q |
17 |
aatgaatctggatgcgcccaacaaatatctctcaatacatctaagtcgtctcttctattccaactcacagaatctacatcctctattaaattcaacaaat |
116 |
Q |
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| T |
39936032 |
aatgaatctgaatgcgcccaataaatatctctccatacatttaagtcgtctcttctattccaactcacagaatctacatcctctattaaattgaacaaat |
39936131 |
T |
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| Q |
117 |
tttgcatctctattctaagacctctcacctctttttccaccatactcctcttcttatatacttggctgatctgaatcacattcta |
201 |
Q |
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| T |
39936132 |
tttgcatctctattctaggacctctcacctctttttccaccatactcctcttcttatatacttggctgatctgaatcacattcta |
39936216 |
T |
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Target: chr2 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 186
Target Start/End: Complemental strand, 29551333 - 29551248
Alignment:
| Q |
101 |
attaaattcaacaaattttgcatctctattctaagacctctcacctctttttccaccatactcctcttcttatatacttggctgat |
186 |
Q |
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|||||||||| |||| ||| |||||| |||||||||||||| | ||||||| || ||||||| |||| | |||||||||| |||| |
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| T |
29551333 |
attaaattcatgaaatgttgtatctctgttctaagacctctcgcatcttttttcagcatactcatcttttaatatacttggatgat |
29551248 |
T |
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