View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_31 (Length: 244)
Name: NF17698_low_31
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_31 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 14630693 - 14630533
Alignment:
| Q |
18 |
cttttggaagttaactttatcttatgatgataaattgacatcctccttttattgcaaagaatataagaatgtcattgttgagcattttgttaattgactt |
117 |
Q |
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| T |
14630693 |
cttttggaagttaactttatcttatgataataaattgacatcctccttttattgcaaagaatataagaatgccattgttgagcattttgttaattgactt |
14630594 |
T |
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| Q |
118 |
gatatgttatttaaactttagaactatgggcatttaacttctaatatttgacttcctttta |
178 |
Q |
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| T |
14630593 |
gatatgttatttagactttagaactatgggcgtttaacttctaatatttgacttcctttta |
14630533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 150 - 237
Target Start/End: Complemental strand, 16632411 - 16632324
Alignment:
| Q |
150 |
tttaacttctaatatttgacttccttttacttataaaaactttgaattctttatgtttgtaacattttctgaagctcttcaatattct |
237 |
Q |
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| T |
16632411 |
tttaacttctaatatttgactttcttttacttataaaaactttgaattctttatgtttacaacattttctgaagctcttcaatattct |
16632324 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 106
Target Start/End: Complemental strand, 16641357 - 16641270
Alignment:
| Q |
19 |
ttttggaagttaactttatcttatgatgataaattgacatcctccttttattgcaaagaatataagaatgtcattgttgagcattttg |
106 |
Q |
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| T |
16641357 |
ttttggaagttaactttatcttatgataataaactgacattctccttatattgcaaagaatataagaatgtcattgttgatcattttg |
16641270 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 209 - 237
Target Start/End: Complemental strand, 14630532 - 14630504
Alignment:
| Q |
209 |
taacattttctgaagctcttcaatattct |
237 |
Q |
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| T |
14630532 |
taacattttctgaagctcttcaatattct |
14630504 |
T |
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