View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_34 (Length: 238)
Name: NF17698_low_34
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 148; Significance: 3e-78; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 11729618 - 11729447
Alignment:
| Q |
51 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaag |
150 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
11729618 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaag |
11729519 |
T |
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| Q |
151 |
taaatatgaggcaacaaaattttaaaaattactttctaccttcaaacagtctatgtcatgagataacaaaat |
222 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11729518 |
taaatatgaggcaacaaaattattaaaattactttctaccttcaaacagtctatgtcatgagataacaaaat |
11729447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 51 - 222
Target Start/End: Complemental strand, 23739930 - 23739759
Alignment:
| Q |
51 |
tggctgacactaaattcacattggcagcgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaaaccaaacttgaattaagaaag |
150 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |
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| T |
23739930 |
tggctgacactaaattcacattggcagtgaaagtaacaatatataggcaactgcttgcctctctctcgatgtaaatcaagccaaactttaaataagaaag |
23739831 |
T |
|
| Q |
151 |
taaatatgaggcaacaaaattttaaaaattactttctaccttcaaacagtctatgtcatgagataacaaaat |
222 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23739830 |
taaatatgaggcaacaaaattattaaaattactttctaccttcaaacagtctatgtcatgagataacaaaat |
23739759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 52; Significance: 6e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 50834515 - 50834464
Alignment:
| Q |
1 |
ttacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtg |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50834515 |
ttacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtg |
50834464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 50841338 - 50841389
Alignment:
| Q |
1 |
ttacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtg |
52 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50841338 |
ttacacacctcttgttcttacaaaccgagaaagcaaattcattccccaagtg |
50841389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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