View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17698_low_40 (Length: 202)

Name: NF17698_low_40
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17698_low_40
NF17698_low_40
[»] chr6 (2 HSPs)
chr6 (143-186)||(11712173-11712216)
chr6 (1-36)||(31412102-31412137)
[»] chr8 (3 HSPs)
chr8 (1-37)||(30935982-30936018)
chr8 (1-36)||(4125151-4125186)
chr8 (1-37)||(2743911-2743947)
[»] chr7 (5 HSPs)
chr7 (1-37)||(13254228-13254264)
chr7 (1-37)||(28537368-28537404)
chr7 (1-36)||(29059784-29059819)
chr7 (1-38)||(40099399-40099436)
chr7 (1-37)||(19477376-19477412)
[»] chr4 (3 HSPs)
chr4 (1-37)||(25768779-25768815)
chr4 (1-37)||(31307193-31307229)
chr4 (1-37)||(35972321-35972357)
[»] chr5 (2 HSPs)
chr5 (1-36)||(10591906-10591941)
chr5 (1-38)||(28023570-28023607)
[»] chr3 (2 HSPs)
chr3 (1-36)||(30996092-30996127)
chr3 (1-37)||(38088613-38088649)
[»] chr2 (3 HSPs)
chr2 (1-36)||(42745243-42745278)
chr2 (1-36)||(44732700-44732735)
chr2 (1-37)||(12133357-12133393)
[»] chr1 (1 HSPs)
chr1 (1-37)||(28724651-28724687)


Alignment Details
Target: chr6 (Bit Score: 44; Significance: 3e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 143 - 186
Target Start/End: Original strand, 11712173 - 11712216
Alignment:
Q  143 aatgtgaactatttgctgtataacatttagtctgtagaaactat 186  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11712173 aatgtgaactatttgctgtataacatttagtctgtagaaactat 11712216  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 31412137 - 31412102
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  31412137 agagacccgttccatctcatctaagtgctcttgggt 31412102  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30936018 - 30935982
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  30936018 agagacccgttccatctcatctaagtgctcttgggta 30935982  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 4125151 - 4125186
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  4125151 agagacccgttccatctcatctaagtgctcttgggt 4125186  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2743947 - 2743911
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  2743947 agagacccgttccatctcatctaaatgctcttgggta 2743911  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13254228 - 13254264
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  13254228 agagacccgttccatctcatctaagcgctcttgggta 13254264  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28537404 - 28537368
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  28537404 agagacccgttccatctcatctaagcgctcttgggta 28537368  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 29059819 - 29059784
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  29059819 agagacccgttccatctcatctaagtgctcttgggt 29059784  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 40099399 - 40099436
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggtag 38  Q
    ||||||||||||||||||||||||| ||||| ||||||    
T  40099399 agagacccgttccatctcatctaagcgctctcgggtag 40099436  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19477376 - 19477412
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||||||||||||||||  |||||||||||    
T  19477376 agagacccgttccatctcatctaaacgctcttgggta 19477412  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 25768779 - 25768815
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  25768779 agagacccgttccatctcatctaagcgctcttgggta 25768815  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 31307193 - 31307229
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  31307193 agagacccgttccatctcatctaagtgctcttgggta 31307229  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35972357 - 35972321
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    |||| |||||||||||||||||||| |||||||||||    
T  35972357 agaggcccgttccatctcatctaagcgctcttgggta 35972321  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 10591941 - 10591906
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10591941 agagacccgttccatctcatctaagtgctcttgggt 10591906  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 28023570 - 28023607
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggtag 38  Q
    ||||| ||||||||||||||||||| ||||||||||||    
T  28023570 agagatccgttccatctcatctaagcgctcttgggtag 28023607  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30996092 - 30996127
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  30996092 agagacccgttccatctcatctaagcgctcttgggt 30996127  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 38088649 - 38088613
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  38088649 agagacccgtttcatctcatctaagcgctcttgggta 38088613  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 42745243 - 42745278
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  42745243 agagacccgttccatctcatctaagcgctcttgggt 42745278  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44732700 - 44732735
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggt 36  Q
    ||||||||||||||||||||||||| ||||||||||    
T  44732700 agagacccgttccatctcatctaagtgctcttgggt 44732735  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12133357 - 12133393
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    |||||| |||||||||||||||||| |||||||||||    
T  12133357 agagactcgttccatctcatctaagcgctcttgggta 12133393  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28724687 - 28724651
Alignment:
Q  1 agagacccgttccatctcatctaagggctcttgggta 37  Q
    |||||| |||||||||||||||||| |||||||||||    
T  28724687 agagactcgttccatctcatctaagcgctcttgggta 28724651  T

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