View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_8 (Length: 505)
Name: NF17698_low_8
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 183 - 499
Target Start/End: Complemental strand, 45593250 - 45592934
Alignment:
| Q |
183 |
caaatatatatcactatgcacacagaataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatatt |
282 |
Q |
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| T |
45593250 |
caaatatacatcactatgcacacagaataaattaacataaactaaaaagacaccaaatcacacatgaagaaaacacatagtaataataacacatcatatt |
45593151 |
T |
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| Q |
283 |
ttgttgaccacaagcttgaacattgtagcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgct |
382 |
Q |
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| T |
45593150 |
ttgttgaccacaagcttgaacattgtagcattagaaaagaccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgct |
45593051 |
T |
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| Q |
383 |
ttgagtaaatcttcacctttctttgcctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatatt |
482 |
Q |
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| T |
45593050 |
ttgagtaaatcttcacctttctttgcctcaatcatagccttcttttcttcagctgccttgtgaagtgctgctattttgtttttcaatttctctgcatatt |
45592951 |
T |
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| Q |
483 |
ctccctttttcttctct |
499 |
Q |
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| T |
45592950 |
ctccctttttcttctct |
45592934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 45593458 - 45593272
Alignment:
| Q |
1 |
tcaacaactgttgattatgtgtaattataatgtcccaggtttcatgatgatctgtgttttgttattcacagtgttttcattggtgtatctttcttcgcca |
100 |
Q |
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| T |
45593458 |
tcaacaactgttgattatgtgtaattataatgtcccaggtttcatgatgatctgtgttttgttatt--cagtgttttcattggtgtatctttctttgcca |
45593361 |
T |
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| Q |
101 |
acatctaagaatgagtgaattagt-ggtctaatacaaggactttatattgcacaaattgagtgagagttaaa--gtttttattcccaaa |
186 |
Q |
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| T |
45593360 |
acatctaagaatgagtgaattagtgggtctaatacaaggactttatattgcacaaattgaatgagagttaaattgtttttattcccaaa |
45593272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 323 - 387
Target Start/End: Original strand, 11750196 - 11750260
Alignment:
| Q |
323 |
ccaaagagtttctttggagctgttccagttgccctgtattttgcagctatctcctctgctttgag |
387 |
Q |
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| T |
11750196 |
ccaaggagtttctttggaacagttcctgttgcattgtgttttgcagctatttcctctgccttgag |
11750260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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