View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17698_low_9 (Length: 447)
Name: NF17698_low_9
Description: NF17698
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17698_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 16 - 272
Target Start/End: Complemental strand, 24518348 - 24518092
Alignment:
| Q |
16 |
aatataagacttaaaatagtcccacacaatcccctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
115 |
Q |
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| T |
24518348 |
aatataagacttaaattagtcccacacaatcctctcacaagaaccaagattcttccacaaatcaattggaagaaaaaatggaaactcccatatagagaaa |
24518249 |
T |
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| Q |
116 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccacgtccacaagtgattctctaagct |
215 |
Q |
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| T |
24518248 |
atttcacctactaaaatcaaggaatgagagaaaacaataacattttgagcccgcaaaatggtactaaaaactaccatgtccacaagtgattctctaagct |
24518149 |
T |
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| Q |
216 |
gattcctttctagcacatgcttcaaaccctacacaattcacattcaactcatacaac |
272 |
Q |
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| T |
24518148 |
gattcctttctagcacatgcttcaaaccctacataatttacattcaactcatacaac |
24518092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 55 - 192
Target Start/End: Complemental strand, 24507314 - 24507177
Alignment:
| Q |
55 |
agaaccaagattcttccacaaatcaattggaagaaaaaa-tggaaactcccatatagagaaaatttcacctactaaaatcaaggaatgagagaaaacaat |
153 |
Q |
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| T |
24507314 |
agaaccaagattcttccacaaatcaattggaaaaaaaaaatggaaactcccatatagagaaaatttcatcaactaaaatcaaggaatgagagaaaac-at |
24507216 |
T |
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| Q |
154 |
aacattttgagcccgcaaaatggtactaaaaactaccac |
192 |
Q |
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| T |
24507215 |
aacattttgagcacgcaaaatagtattaaaaactaccac |
24507177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 346 - 428
Target Start/End: Complemental strand, 24518018 - 24517936
Alignment:
| Q |
346 |
cttgtatcatctaccttgatcatgtaacagaggaagtgttagtcaaccaattttcataatataccaaaaaattgcataaggag |
428 |
Q |
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| T |
24518018 |
cttgtatcatctaccttgatcatgtaacagaggaagagttagtcaaccaattttcataatataccaaaaaattccataaggag |
24517936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 24507460 - 24507421
Alignment:
| Q |
19 |
ataagacttaaaatagtcccacacaatcccctcacaagaa |
58 |
Q |
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| T |
24507460 |
ataagagttaaaatagtcctacacaatcccctcacaagaa |
24507421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 271
Target Start/End: Complemental strand, 24506500 - 24506448
Alignment:
| Q |
219 |
tcctttctagcacatgcttcaaaccctacacaattcacattcaactcatacaa |
271 |
Q |
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| T |
24506500 |
tccttcctagcgcatgcttcaaaacctgcacaatttacattcaactcacacaa |
24506448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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