View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_high_13 (Length: 295)
Name: NF17699_high_13
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_high_13 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-147; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 6854478 - 6854771
Alignment:
| Q |
1 |
acctttttctgtttacacttatcactctttactacactatagtgatgttagtctatgtagattacaatcattacatcttagctactggcaattcacttcc |
100 |
Q |
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| T |
6854478 |
acctttttttgtttacacttatcactctttactacactatagtgatgttagtctatgtagattacaatcattacatcttagctactggcaattcacttcc |
6854577 |
T |
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| Q |
101 |
ccacattcagcaacacattaccaaagattaaaagttagtttacgctcaaacaacattagaatttgtcatattttttggctatagaggttcaacacctcaa |
200 |
Q |
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| T |
6854578 |
ccacattcagcaacacattaccaaagattaaaagttagtttacgctcaaacaactttagaatttggcatattttttggctatagaggttcaacacctcaa |
6854677 |
T |
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| Q |
201 |
aaatggtagccatagcgctgctcagcaacaattttagcattgttgttctatccgacgccccatttctacatgccaaaacaaaacatatggagctt |
295 |
Q |
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| T |
6854678 |
aaatggtagccatagcgctgctcagcaacaatgttagcattcttgttctatccaacgcccca-ttctacatgccaaaacaaaacatatggagctt |
6854771 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 293
Target Start/End: Complemental strand, 6823712 - 6823638
Alignment:
| Q |
219 |
tgctcagcaacaattttagcattgttgttctatccgacgccccatttctacatgccaaaacaaaacatatggagc |
293 |
Q |
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||||| |||||||| |||||||||||||||||||| ||| ||| ||||||||| | |||| |||||||| |||| |
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| T |
6823712 |
tgctctgcaacaatgttagcattgttgttctatcctacgaccccattctacatgtcgaaaccaaacatatagagc |
6823638 |
T |
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