View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_high_3 (Length: 507)
Name: NF17699_high_3
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 471; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 10 - 488
Target Start/End: Complemental strand, 6130192 - 6129714
Alignment:
| Q |
10 |
attattcttgaatcacataaataagaatcatgtggtgattcatgttatcaatcttatttatgatgtgttttcagaaaaagagttgtgatctcttttccat |
109 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6130192 |
attattcttgaatcacataaataagaatcatgtggtgattcatgttatcaatcttatttatgatgtgttttcagaaaaagagttgtgatctcttttccat |
6130093 |
T |
|
| Q |
110 |
atatggtgacattaacatagacaatataatacatagtaacatttatgcataaccaagaagaaagttattaattattaagaaaagttatttttaatcccat |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6130092 |
atatggtgacattaacatagacaatataatacatagtaacatttatgcataaccaagaagaaagttattaattattaagaaaagttatttttaatcccat |
6129993 |
T |
|
| Q |
210 |
ttgtttaaattttcattacttaaagatcacataattaatagattattactccacacaggcggtagagagcattgtgcctcctatgtgcaaggaggctaaa |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
6129992 |
ttgtttaaattttcattacttaaagatcacataattaatagattattactccacacaggcggtagagagcgttgtgcctcctatgtgcaaggaggctaaa |
6129893 |
T |
|
| Q |
310 |
aatgcagatggtctaaagcctcgtgaattatttacgaaaaatcatgagaagcttgtgaatgaaggtcgacaatgggcaaaagatacagcaagttctttca |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6129892 |
aatgcagatggtctaaagcctcgtgaattatttacgaaaaatcatgagaagcttgtgaatgaaggtcgacaatgggcaaaagatacagcaagttctttca |
6129793 |
T |
|
| Q |
410 |
caattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatcaagataaggg |
488 |
Q |
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| T |
6129792 |
caattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatcaatataaggg |
6129714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 270 - 488
Target Start/End: Complemental strand, 6858853 - 6858635
Alignment:
| Q |
270 |
ggtagagagcattgtgcctcctatgtgcaaggaggctaaaaatgcagatggtctaaagcctcgtgaattatttacgaaaaatcatgagaagcttgtgaat |
369 |
Q |
| |
|
||||||||||||||||||||| |||||| | || |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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| T |
6858853 |
ggtagagagcattgtgcctccgatgtgccaagaagctaaaaatgcagatggtctaaagcctcgtgaattatttaagaaaaatcatgagcagcttgtgaat |
6858754 |
T |
|
| Q |
370 |
gaaggtcgacaatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggag |
469 |
Q |
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||||||||||||||||| ||||||| ||| ||||||||||||||| | |||||||| || ||||||||||||||||| || ||||||||||||||||||| |
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| T |
6858753 |
gaaggtcgacaatgggcgaaagatatagcgagttctttcacaattatgggtactcttattattaccatcatgtttgctgcagctttcactgttccaggag |
6858654 |
T |
|
| Q |
470 |
gaaacaatcaagataaggg |
488 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
6858653 |
gaaacaatcaagataaggg |
6858635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 255 - 485
Target Start/End: Original strand, 6105956 - 6106186
Alignment:
| Q |
255 |
ttactccacacaggcggtagagagcattgtgcctcctatgtgcaaggaggctaaaaatgcagatggtctaaagcctcgtgaattatttacgaaaaatcat |
354 |
Q |
| |
|
|||||||| ||||||||||||||| | ||||||||| ||||||||||| || ||||| ||||| ||| ||| ||||| |||||||||||||||||||||| |
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| T |
6105956 |
ttactccatacaggcggtagagagtactgtgcctccaatgtgcaaggaagcaaaaaacgcagacggtttaacgcctcatgaattatttacgaaaaatcat |
6106055 |
T |
|
| Q |
355 |
gagaagcttgtgaatgaaggtcgacaatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctt |
454 |
Q |
| |
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||| | ||| |||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||| || |||| |
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| T |
6106056 |
gagcaccttctgaacgaaggtcgacaatgggcaaaagatatagcaagttctttcacaattgtgggtactctcatcattaccatcatgtttgctgcagctt |
6106155 |
T |
|
| Q |
455 |
tcactgttccaggaggaaacaatcaagataa |
485 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |
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|
| T |
6106156 |
tcactgttccaggaggaaacaatcaggataa |
6106186 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 380 - 484
Target Start/End: Complemental strand, 11919328 - 11919224
Alignment:
| Q |
380 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
479 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| |||||||| |||| |||| ||||||||||||| || || || || || || ||||||||||| |
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| T |
11919328 |
aatgggcaaaagagacagcaacatctttcacaattgtaggtactcttatcactaccgtcatgtttgccgcagcatttacagtcccgggcggaaacaatca |
11919229 |
T |
|
| Q |
480 |
agata |
484 |
Q |
| |
|
||||| |
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|
| T |
11919228 |
agata |
11919224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 380 - 482
Target Start/End: Complemental strand, 11790646 - 11790544
Alignment:
| Q |
380 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
479 |
Q |
| |
|
||||||||||||| |||||| |||| || ||| |||||| |||||| |||| |||||||||||||| || ||||||||||| || || ||||||||||| |
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| T |
11790646 |
aatgggcaaaagaaacagcaggttcatttacacttgttgctactctcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatca |
11790547 |
T |
|
| Q |
480 |
aga |
482 |
Q |
| |
|
||| |
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|
| T |
11790546 |
aga |
11790544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 380 - 482
Target Start/End: Complemental strand, 11834863 - 11834761
Alignment:
| Q |
380 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
479 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||||| ||| || |||| |||||||||||||| || ||||||||||| || || ||||||||||| |
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|
| T |
11834863 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatca |
11834764 |
T |
|
| Q |
480 |
aga |
482 |
Q |
| |
|
||| |
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|
| T |
11834763 |
aga |
11834761 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 482
Target Start/End: Original strand, 11748091 - 11748193
Alignment:
| Q |
380 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
479 |
Q |
| |
|
||||||||||||||||||| |||| || ||| |||||| ||| || |||| ||||||||||| || || ||||||||||| || || ||||||||||| |
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|
| T |
11748091 |
aatgggcaaaagatacagctggttcatttacacttgttgctacactcatcacaaccatcatgttcgctgcagctttcactgtccctggtggaaacaatca |
11748190 |
T |
|
| Q |
480 |
aga |
482 |
Q |
| |
|
||| |
|
|
| T |
11748191 |
aga |
11748193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 380 - 482
Target Start/End: Complemental strand, 11882475 - 11882373
Alignment:
| Q |
380 |
aatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgccgctgctttcactgttccaggaggaaacaatca |
479 |
Q |
| |
|
||||||||||||||||||| |||| || || |||||| ||| || |||| |||||||||||||| || ||||||||||| || || ||||||||||| |
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|
| T |
11882475 |
aatgggcaaaagatacagctggttcatttactcttgttgctacactcatcacaaccatcatgtttgctgcagctttcactgtccctggtggaaacaatca |
11882376 |
T |
|
| Q |
480 |
aga |
482 |
Q |
| |
|
||| |
|
|
| T |
11882375 |
aga |
11882373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 347 - 482
Target Start/End: Complemental strand, 11754538 - 11754403
Alignment:
| Q |
347 |
aaaatcatgagaagcttgtgaatgaaggtcgacaatgggcaaaagatacagcaagttctttcacaattgttggtactctaatcattaccatcatgtttgc |
446 |
Q |
| |
|
||||||| |||||||| ||||| ||||| | |||||||||||| |||||| || || ||| |||| | ||| || |||| |||||||||||||| |
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|
| T |
11754538 |
aaaatcacgagaagctagtgaaagaaggggcaacatgggcaaaagagacagcagaatcatttacacttgtggctacacttatcacaaccatcatgtttgc |
11754439 |
T |
|
| Q |
447 |
cgctgctttcactgttccaggaggaaacaatcaaga |
482 |
Q |
| |
|
|| ||||||||||| || || |||||||||||||| |
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|
| T |
11754438 |
tgcagctttcactgtccctggtggaaacaatcaaga |
11754403 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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