View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17699_low_1 (Length: 658)

Name: NF17699_low_1
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17699_low_1
NF17699_low_1
[»] chr8 (13 HSPs)
chr8 (8-641)||(44633161-44633789)
chr8 (450-639)||(39568333-39568521)
chr8 (442-611)||(39269492-39269662)
chr8 (428-641)||(45378355-45378563)
chr8 (554-641)||(39567106-39567193)
chr8 (337-404)||(39270419-39270486)
chr8 (337-404)||(39567461-39567528)
chr8 (337-404)||(45377513-45377580)
chr8 (554-639)||(39270722-39270807)
chr8 (554-639)||(44632751-44632836)
chr8 (347-384)||(45378302-45378339)
chr8 (347-384)||(39568269-39568306)
chr8 (347-379)||(39269687-39269719)
[»] chr6 (11 HSPs)
chr6 (8-639)||(5659588-5660204)
chr6 (8-408)||(21612132-21612531)
chr6 (442-641)||(21282860-21283058)
chr6 (316-408)||(21612570-21612663)
chr6 (554-640)||(5659149-5659235)
chr6 (337-404)||(21283557-21283624)
chr6 (554-639)||(21611960-21612045)
chr6 (576-639)||(21612831-21612894)
chr6 (442-477)||(21612691-21612726)
chr6 (508-545)||(21612771-21612808)
chr6 (598-641)||(20489413-20489456)
[»] scaffold0031 (6 HSPs)
scaffold0031 (442-641)||(123467-123665)
scaffold0031 (442-641)||(134343-134541)
scaffold0031 (337-404)||(128992-129059)
scaffold0031 (554-640)||(129347-129433)
scaffold0031 (347-379)||(123694-123726)
scaffold0031 (347-379)||(134565-134597)
[»] chr4 (21 HSPs)
chr4 (442-641)||(702467-702665)
chr4 (442-641)||(770766-770964)
chr4 (444-641)||(756530-756726)
chr4 (450-641)||(35060278-35060468)
chr4 (450-636)||(16039503-16039688)
chr4 (554-641)||(35055376-35055463)
chr4 (337-404)||(702033-702100)
chr4 (337-404)||(757085-757152)
chr4 (337-404)||(770332-770399)
chr4 (572-641)||(701676-701745)
chr4 (572-641)||(769975-770044)
chr4 (554-641)||(757427-757514)
chr4 (337-404)||(35055737-35055804)
chr4 (337-404)||(16038664-16038731)
chr4 (593-641)||(16038318-16038366)
chr4 (347-384)||(16039437-16039474)
chr4 (347-384)||(35060215-35060252)
chr4 (442-477)||(33075036-33075071)
chr4 (347-379)||(702411-702443)
chr4 (347-379)||(756759-756791)
chr4 (347-379)||(770710-770742)
[»] chr3 (12 HSPs)
chr3 (453-641)||(21815951-21816139)
chr3 (554-641)||(21817328-21817415)
chr3 (354-398)||(36982928-36982972)
chr3 (354-398)||(37008367-37008411)
chr3 (442-477)||(36982856-36982891)
chr3 (442-477)||(37008295-37008330)
chr3 (370-408)||(21816177-21816215)
chr3 (599-641)||(36982693-36982735)
chr3 (599-641)||(37008132-37008174)
chr3 (596-641)||(14859103-14859148)
chr3 (487-528)||(36982826-36982867)
chr3 (487-528)||(37008265-37008306)
[»] chr1 (7 HSPs)
chr1 (442-641)||(51599250-51599448)
chr1 (490-641)||(16962053-16962203)
chr1 (554-641)||(51598004-51598091)
chr1 (337-404)||(51598362-51598429)
chr1 (554-639)||(16963354-16963439)
chr1 (337-404)||(16962999-16963066)
chr1 (347-379)||(51599192-51599224)
[»] chr7 (10 HSPs)
chr7 (456-641)||(21709201-21709386)
chr7 (487-641)||(26025728-26025881)
chr7 (554-641)||(26024930-26025017)
chr7 (337-404)||(26025287-26025354)
chr7 (572-641)||(21710547-21710616)
chr7 (337-404)||(21710193-21710259)
chr7 (442-477)||(26025704-26025739)
chr7 (596-641)||(10990568-10990613)
chr7 (347-379)||(21709415-21709447)
chr7 (347-379)||(26025648-26025680)
[»] chr2 (2 HSPs)
chr2 (598-639)||(36889719-36889760)
chr2 (598-639)||(36888383-36888424)
[»] chr5 (1 HSPs)
chr5 (453-486)||(24648582-24648615)


Alignment Details
Target: chr8 (Bit Score: 504; Significance: 0; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 8 - 641
Target Start/End: Original strand, 44633161 - 44633789
Alignment:
Q  8 gaggagcacagatgaaggagaattggaacacgtttcagcacccaatcaaaagaggaacacatgaataagaacaagaacacgaaaaactcgaagatgattt 107  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  44633161 gaggaacacagatgaaggagaattggaacacgtttcagcacccaatcaaaagaggaacacatgaataagaacaagaacacgaaaaacttgaagatgattt 44633260  T
Q  108 gcgatttgcagtttcaacaacgcaaatcaacgattttgagcatgatttccgattttcatttgttcaagaggaactgaaaacaaattttcatttgatggtg 207  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  44633261 gcaatttgcagtttcaacaacgcaaatcaacgattttgagcatgatttccgattttcatttgttcaagaggaactgaaaacgaattttcatttgatggtg 44633360  T
Q  208 ttatggtgttacgggaagacctatggaagaagaagaagactacttatggtgttatgggtgaagctgttgtcaatgtaataaaatnnnnnnnnttagtcat 307  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||         ||||||||    
T  44633361 ttatggtgttacgagaagacctatggaagaagaagaagactacttatggtgttatgggtgaagctgttgtcattgtaataaaa----aaaaattagtcat 44633456  T
Q  308 tccaaatcttaaagaaattcacaaataaaatgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtttaa 407  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  44633457 tccaaatcttaaagaaattcagaaataaaatgataatgggtttagatttggatttcatatgataaaggtaaaattttatttgatgagttttgttgtttaa 44633556  T
Q  408 gnnnnnnncttcttctggatttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattc 507  Q
    |       |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  44633557 gtttttttcttcttctgggtttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggcgaggaggaagaagatgaatataaattc 44633656  T
Q  508 caaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggact 607  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  44633657 caaccaatgcgaaaatgacacgtgtgcttgagttaacg-tttttttaataaaattaacggaagagaccaatttatgtaaaagagacatatttaaaggact 44633755  T
Q  608 caaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||||||||||||||||||||||||||||    
T  44633756 caaataaactttttattaattatgggaccaaagc 44633789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 450 - 639
Target Start/End: Original strand, 39568333 - 39568521
Alignment:
Q  450 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnn 549  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||        
T  39568333 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaatttcaaccaatgcgaaaatgacacgtgtgcttgagttaacg-ttt 39568431  T
Q  550 nnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
        |||||||||||||||   |||||||||||||||  ||||||||||||||||||||||| |||||||||||||||||||| ||||||    
T  39568432 ttttaataaaattaacggaatggaccaatttatgtaacggagacatatttaaaggactcaaacaaactttttattaattatggaaccaaa 39568521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 442 - 611
Target Start/End: Complemental strand, 39269662 - 39269492
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39269662 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttaagtt 39269563  T
Q  542 aacgnnnnnnnnaataaaattaacggatgagaccaatt--tatgtaaaagagacatatttaaaggactcaaa 611  Q
    ||||        ||||||||||||||| ||||||||||  |||||||  |||||||||||||||||||||||    
T  39269562 aacg-tttttttaataaaattaacggaagagaccaatttatatgtaacggagacatatttaaaggactcaaa 39269492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 428 - 641
Target Start/End: Original strand, 45378355 - 45378563
Alignment:
Q  428 ttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgaca 527  Q
    |||||||||||   ||||||||||||||||||||||||||||   |||||||||||||||| |||||||||||||||||||||||| |||||||||||||    
T  45378355 ttgtatgaagggttatgaaggttttatgaagatttgttgaag---atgaaggtgaggaggaggaagatgaatataaattccaaccattgcgaaaatgaca 45378451  T
Q  528 cgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaat 627  Q
         |||||||||||||        |||||||||||||||  |||||||||||| ||| |||| ||||||||||||||| ||| | | |||||||||||    
T  45378452 tacacgcttgagttaacg--ttttttaataaaattaacggaatagaccaatttatataatagaggcatatttaaaggactgaaacataatttttattaat 45378549  T
Q  628 tatgggaccaaagc 641  Q
    ||||||||||||||    
T  45378550 tatgggaccaaagc 45378563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 554 - 641
Target Start/End: Complemental strand, 39567193 - 39567106
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||| ||||| | ||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  39567193 aataaaattgacggaagggaccaatttatgtaacagagacatatttaaaggactcaaatgaactttttatcaattatgggaccaaagc 39567106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 39270486 - 39270419
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||    
T  39270486 atgataaagggtttagatttagatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 39270419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 39567461 - 39567528
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  39567461 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatctgatgagttttgttgtt 39567528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 45377513 - 45377580
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||| | |||||| ||||||||||||||||||||||||||||||    
T  45377513 atgataaagggtttagatttggatttcaaatgataaatgtaaagttttatttgatgagttttgttgtt 45377580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 554 - 639
Target Start/End: Original strand, 39270722 - 39270807
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
    ||||||||| ||||| | |||||||||||||||   ||||||||||||||||||||||   |||||||||||||||||||||||||    
T  39270722 aataaaattgacggaagggaccaatttatgtaatgtagacatatttaaaggactcaaacggactttttattaattatgggaccaaa 39270807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 554 - 639
Target Start/End: Complemental strand, 44632836 - 44632751
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
    ||||||||||||||| |  || |||||||||||  |||||||||||||||||||||||  || |||||||||||| ||||||||||    
T  44632836 aataaaattaacggaaggaactaatttatgtaacggagacatatttaaaggactcaaacgaattttttattaattttgggaccaaa 44632751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 45378302 - 45378339
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaagtttt 384  Q
    |||||||||||||||||||| |||||||||||||||||    
T  45378302 gtttagatttggatttcatatgataaaggtaaagtttt 45378339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 39568269 - 39568306
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaagtttt 384  Q
    |||||||||||||||||| | |||||||||||||||||    
T  39568269 gtttagatttggatttcaaatgataaaggtaaagtttt 39568306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 39269719 - 39269687
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  39269719 gtttagatttggatttcatatgataaaggtaaa 39269687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 8 - 639
Target Start/End: Original strand, 5659588 - 5660204
Alignment:
Q  8 gaggagcacagatgaaggagaattggaacacg-tttcagcaccc-aatcaaaagaggaacacatgaataagaacaagaacacgaaaaactcgaagatgat 105  Q
    ||||| |||| ||||||||||||||||||||| |||||| |||| ||||||||||||||||||||| ||||||| ||||||| ||||||| |||||| ||    
T  5659588 gaggaacacatatgaaggagaattggaacacgatttcagtaccccaatcaaaagaggaacacatgagtaagaactagaacacaaaaaacttgaagattat 5659687  T
Q  106 ttgcgatttgcagtttcaacaacgca----aatcaacgattttgagcatgatttccgattttcatttgttcaagaggaactgaaaacaaattttcatttg 201  Q
    |||| ||||       ||||||||||    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||||||| ||||    
T  5659688 ttgcaattt-------caacaacgcatgcaaatcaacgattttgagcatgatttccgattttcatttgtttaagaggaattgaaaacgaattttcgtttg 5659780  T
Q  202 atggtgttatggtgttacgggaagacctatggaagaagaagaagactacttatggtgttatgggtgaagctgttgtcaatgtaataaaatnnnnnnnntt 301  Q
    |||||||||||         |||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||| || |||||||         ||    
T  5659781 atggtgttatga--------gaagacctatggaagaagaagacgacgacttatggtgttatgggtgaagttgttgtcattggaataaaa----aaaattt 5659868  T
Q  302 agtcattccaaatcttaaagaaattcacaaat-aaaatgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgt 400  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||||| |||||||||||||| |||| |||||||||||||    
T  5659869 agtcattccaaatcttaaagaaattcacaaattaaaatgataatgagtttagattaggatttcatatgataaaggtaaagtattatatgatgagttttgt 5659968  T
Q  401 tgtttaagnnnnnnncttcttctggatttgtatgaaggtggatgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaata 500  Q
    ||||||||        || || |   ||| | ||    || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  5659969 tgtttaagtttttttttttttttt--tttctctgggtttgtatgaaggttttatgaagatttgttgaagaagatgaagatgaggaggaagaagatgaata 5660066  T
Q  501 taaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatattta 600  Q
    |||||||||||||||| |||||||||||||||||||||||||||         ||||||||||||||| |  |||||||||||||| |||||||||||||    
T  5660067 taaattccaaccaatgtgaaaatgacacgtgtgcttgagttaacatattttttaataaaattaacggaaggaaccaatttatgtaacagagacatattta 5660166  T
Q  601 aaggactcaaataaactttttattaattatgggaccaaa 639  Q
    ||||| |||||   || |||||||||||||| |||||||    
T  5660167 aaggattcaaacggac-ttttattaattatgagaccaaa 5660204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 8 - 408
Target Start/End: Original strand, 21612132 - 21612531
Alignment:
Q  8 gaggagcacagatgaaggagaattggaacacg-tttcagcacccaatcaaaagaggaacacatgaataagaacaagaacacgaaaaactcgaagatgatt 106  Q
    ||||| |||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||    
T  21612132 gaggaacacagatgaaggagaattggaacacgatttaagtacccaatcaaaagaggaacacatgaataagaactagaacatgaaaaacttgaagatgatt 21612231  T
Q  107 tgcgatttgcagtttcaacaacgcaaatcaacgattttgagcatgatttccgattttcatttgttcaagaggaactgaaaacaaattttcatttgatggt 206  Q
    | ||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  21612232 tccgatttgcagtttcaacaacgcaaatcaaagattttaagcatgatttccgattttcatttgttcaagaggaactgaaaacgaattttcatttgatggt 21612331  T
Q  207 gttatggtgttacgggaagacctatg---------gaagaagaagaagactacttatggtgttatgggtgaagctgttgtcaatgtaataaaatnnnnnn 297  Q
    |||||        | |||||||||||         ||||||||||||||  ||||||||||||||||||||||||||||||| || ||| |||           
T  21612332 gttat--------gagaagacctatggaagaagaagaagaagaagaagaagacttatggtgttatgggtgaagctgttgtcattggaatgaaa----aaa 21612419  T
Q  298 nnttagtcattccaaatcttaaagaaattcacaaa-taaaatgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagtt 396  Q
      |||||||||||||||||||| |||||||||||| |||| |||||||| |||| ||||||||||||||| |||||||||||| ||||||||||| ||||    
T  21612420 atttagtcattccaaatcttaaggaaattcacaaattaaagtgataatgagttttgatttggatttcatatgataaaggtaaaattttatttgataagtt 21612519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 5e-70
Query Start/End: Original strand, 442 - 641
Target Start/End: Complemental strand, 21283058 - 21282860
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||||    
T  21283058 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaagataaattccaactaatgcgaaaatgacacatgtgcttgagtt 21282959  T
Q  542 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||        ||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||| | |||||||||||||||||||||||||||    
T  21282958 aacg-tttttttaataaaattaacggaagggaccaatttatgtaacagagacatatttaaaagactcaaacagactttttattaattatgggaccaaagc 21282860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 316 - 408
Target Start/End: Original strand, 21612570 - 21612663
Alignment:
Q  316 ttaaagaaattcacaaat-aaaatgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtttaag 408  Q
    |||| ||||||||||||| |||||||||||| |||| ||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||    
T  21612570 ttaaggaaattcacaaattaaaatgataatgagttttgatttggatttcatatgataaaggtaaaattttatttgatgagttttgttgtttaag 21612663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 554 - 640
Target Start/End: Complemental strand, 5659235 - 5659149
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaag 640  Q
    ||||||||||||||| |   ||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||    
T  5659235 aataaaattaacggaaggagccaatttatgtaacagagacatatttaaaggactcaaacagactttttattaattatgggaccaaag 5659149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 21283624 - 21283557
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    |||||||  ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  21283624 atgataaatggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 21283557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 554 - 639
Target Start/End: Complemental strand, 21612045 - 21611960
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
    |||||||||||| || | |||||| |||||||| |||||||||||||||| |||||||   | |||||||||||||||||||||||    
T  21612045 aataaaattaactgaagggaccaaattatgtaacagagacatatttaaagaactcaaacggattttttattaattatgggaccaaa 21611960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 576 - 639
Target Start/End: Original strand, 21612831 - 21612894
Alignment:
Q  576 aatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
    ||||| |||||  ||||||||||||||||||||||| | |||||||||||||||||||||||||    
T  21612831 aatttttgtaacggagacatatttaaaggactcaaacagactttttattaattatgggaccaaa 21612894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 477
Target Start/End: Original strand, 21612691 - 21612726
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaa 477  Q
    ||||||||||||||||||||||||||||||||||||    
T  21612691 atgaaggttttatgaagatttgttgaagaagatgaa 21612726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 508 - 545
Target Start/End: Original strand, 21612771 - 21612808
Alignment:
Q  508 caaccaatgcgaaaatgacacgtgtgcttgagttaacg 545  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21612771 caaccaatgcgaaaatgacatgtgtgcttgagttaacg 21612808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 598 - 641
Target Start/End: Original strand, 20489413 - 20489456
Alignment:
Q  598 ttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||||||||||||| | ||||||||||| |||||||||||||||    
T  20489413 ttaaaggactcaaacatactttttattacttatgggaccaaagc 20489456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 136; Significance: 1e-70; HSPs: 6)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 442 - 641
Target Start/End: Complemental strand, 123665 - 123467
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  123665 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 123566  T
Q  542 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  123565 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggactcaagcggactttttattaattatgggaccaaagc 123467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 442 - 641
Target Start/End: Complemental strand, 134541 - 134343
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  134541 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 134442  T
Q  542 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||||||    |||||||||||||||||||||||||||    
T  134441 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggactcaagcggactttttattaattatgggaccaaagc 134343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 129059 - 128992
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  129059 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 128992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #4
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 554 - 640
Target Start/End: Original strand, 129347 - 129433
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaag 640  Q
    ||||||||| ||||| | |||||||||||||||  |||||||||||||||||||||||   ||||||||||||||||||||||||||    
T  129347 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaag 129433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 123726 - 123694
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  123726 gtttagatttggatttcatatgataaaggtaaa 123694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 134597 - 134565
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  134597 gtttagatttggatttcatatgataaaggtaaa 134565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 132; Significance: 3e-68; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 442 - 641
Target Start/End: Original strand, 702467 - 702665
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  702467 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 702566  T
Q  542 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||    |||||||||||||||||||||||||||    
T  702567 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaagcggactttttattaattatgggaccaaagc 702665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 132; E-Value: 3e-68
Query Start/End: Original strand, 442 - 641
Target Start/End: Original strand, 770766 - 770964
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  770766 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 770865  T
Q  542 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||    |||||||||||||||||||||||||||    
T  770866 aac-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaagcggactttttattaattatgggaccaaagc 770964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 444 - 641
Target Start/End: Complemental strand, 756726 - 756530
Alignment:
Q  444 gaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaa 543  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  756726 gaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaa 756627  T
Q  544 cgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |         ||||||||||||||| | |||||||||||||||  ||||||||||||||||||| ||    |||||||||||||||||||||||||||    
T  756626 c-atttttttaataaaattaacggaagggaccaatttatgtaacggagacatatttaaaggacttaagcggactttttattaattatgggaccaaagc 756530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 450 - 641
Target Start/End: Original strand, 35060278 - 35060468
Alignment:
Q  450 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnn 549  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |        
T  35060278 tttatgaagatttgttgaagaaggtgaaggtgaggaggaagaagatgaatataaattccaaccaatgcaaaaatgacacgtgtgcttgagttaatg-ttt 35060376  T
Q  550 nnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
        ||||||||||||||| | ||||||||||||||| ||||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  35060377 ttttaataaaattaacggaagggaccaatttatgtaacagagacatatttaaaggactcaaacggactttttattaattatgggaccaaagc 35060468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 450 - 636
Target Start/End: Original strand, 16039503 - 16039688
Alignment:
Q  450 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnn 549  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||        
T  16039503 tttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattctaaccaatgcgaaaatgacatgtgtgtttgagttaacg-ttt 16039601  T
Q  550 nnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggacc 636  Q
        ||||||||||||||| | |||||||||||||||  |||||||||||||||||||||||   ||||||||||||||||||||||    
T  16039602 ttttaataaaattaacggaagggaccaatttatgtaatggagacatatttaaaggactcaaacggactttttattaattatgggacc 16039688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 554 - 641
Target Start/End: Complemental strand, 35055463 - 35055376
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||  |||||||||||||||||||||||||||    
T  35055463 aataaaattgacggaggggaccaatttatgtaacagagacatatttaaaggactcaaatggactttttattaattatgggaccaaagc 35055376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 702033 - 702100
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  702033 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 702100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 757152 - 757085
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  757152 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 757085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 770332 - 770399
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  770332 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 770399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 641
Target Start/End: Complemental strand, 701745 - 701676
Alignment:
Q  572 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  701745 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagc 701676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 641
Target Start/End: Complemental strand, 770044 - 769975
Alignment:
Q  572 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  770044 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagc 769975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 554 - 641
Target Start/End: Original strand, 757427 - 757514
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||| ||||| |  || |||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  757427 aataaaattgacggaaggaactaatttatgtaacggagacatatttaaaggactcaaactgactttttattaattatgggaccaaagc 757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 35055737 - 35055804
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| ||||| |||||| |||||||||||||||||    
T  35055737 atgataaagggtttagatttggatttcatatgataaatgtaaaattttatctgatgagttttgttgtt 35055804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 16038664 - 16038731
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| ||||||||||||||||||||||  | ||| |||||||||||| |||||||||||||||||    
T  16038664 atgataaagggtttagatttggatttcatataagaaatgtaaagttttatctgatgagttttgttgtt 16038731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 593 - 641
Target Start/End: Complemental strand, 16038366 - 16038318
Alignment:
Q  593 catatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||||||||||||||  | |||||||||||||||||||||||||    
T  16038366 catatttaaaggactcaaatggattttttattaattatgggaccaaagc 16038318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 16039437 - 16039474
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaagtttt 384  Q
    |||||||||||||||||||| |||||||||||||||||    
T  16039437 gtttagatttggatttcatatgataaaggtaaagtttt 16039474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 347 - 384
Target Start/End: Original strand, 35060215 - 35060252
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaagtttt 384  Q
    |||||||||||||||||||| |||||||||||||||||    
T  35060215 gtttagatttggatttcatatgataaaggtaaagtttt 35060252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 477
Target Start/End: Original strand, 33075036 - 33075071
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaa 477  Q
    |||||||||||||||||||||| |||||||||||||    
T  33075036 atgaaggttttatgaagatttgatgaagaagatgaa 33075071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 702411 - 702443
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  702411 gtttagatttggatttcatatgataaaggtaaa 702443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 756791 - 756759
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  756791 gtttagatttggatttcatatgataaaggtaaa 756759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 770710 - 770742
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  770710 gtttagatttggatttcatatgataaaggtaaa 770742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 453 - 641
Target Start/End: Complemental strand, 21816139 - 21815951
Alignment:
Q  453 atgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnn 552  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||           
T  21816139 atgaagatttgttgaagaagatgaaggcgaggaggaagaagatgaatataaattccaaccaatgcaaaaatgacacgtgtgcttgagttaacg-tttttt 21816041  T
Q  553 naataaaattaacggatgagaccaatttatgtaaaagagacatatttaaa-ggactcaaataaactttttattaattatgggaccaaagc 641  Q
     ||||||||||||||| | ||||||||||||||| ||||||||||||||| |||||||||   |||||||||||||||||| ||||||||    
T  21816040 taataaaattaacggaagggaccaatttatgtaacagagacatatttaaagggactcaaacggactttttattaattatggaaccaaagc 21815951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 554 - 641
Target Start/End: Original strand, 21817328 - 21817415
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||||||||| | ||| || |||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  21817328 aataaaattaacggaagggactaagttatgtaacagagacatatttaaaggactcaaacagactttttattaattatgggaccaaagc 21817415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 36982972 - 36982928
Alignment:
Q  354 tttggatttcataagataaaggtaaagttttatttgatgagtttt 398  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||    
T  36982972 tttgaatttcatatgataaaggtaaaattttatttgatgagtttt 36982928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 354 - 398
Target Start/End: Complemental strand, 37008411 - 37008367
Alignment:
Q  354 tttggatttcataagataaaggtaaagttttatttgatgagtttt 398  Q
    |||| |||||||| |||||||||||| ||||||||||||||||||    
T  37008411 tttgaatttcatatgataaaggtaaaattttatttgatgagtttt 37008367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 477
Target Start/End: Complemental strand, 36982891 - 36982856
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaa 477  Q
    |||||||||||||||||||||| |||||||||||||    
T  36982891 atgaaggttttatgaagatttgatgaagaagatgaa 36982856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 442 - 477
Target Start/End: Complemental strand, 37008330 - 37008295
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaa 477  Q
    |||||||||||||||||||||| |||||||||||||    
T  37008330 atgaaggttttatgaagatttgatgaagaagatgaa 37008295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 21816215 - 21816177
Alignment:
Q  370 taaaggtaaagttttatttgatgagttttgttgtttaag 408  Q
    ||||||||||||||| |||||||| ||||||||||||||    
T  21816215 taaaggtaaagttttttttgatgaattttgttgtttaag 21816177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 641
Target Start/End: Complemental strand, 36982735 - 36982693
Alignment:
Q  599 taaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||||||| | ||||||||||| |||||||||||||||    
T  36982735 taaaggactcaaacagactttttattacttatgggaccaaagc 36982693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 599 - 641
Target Start/End: Complemental strand, 37008174 - 37008132
Alignment:
Q  599 taaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||||||| | ||||||||||| |||||||||||||||    
T  37008174 taaaggactcaaacagactttttattacttatgggaccaaagc 37008132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 641
Target Start/End: Original strand, 14859103 - 14859148
Alignment:
Q  596 atttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||| |||||||||| ||||||||||| |||||| ||||||||    
T  14859103 atttaaatgactcaaatagactttttattacttatggaaccaaagc 14859148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 528
Target Start/End: Complemental strand, 36982867 - 36982826
Alignment:
Q  487 gaagaagatgaatataaattccaaccaatgcgaaaatgacac 528  Q
    |||||||||||||||| |||||| |||||||||| |||||||    
T  36982867 gaagaagatgaatatatattccagccaatgcgaagatgacac 36982826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 487 - 528
Target Start/End: Complemental strand, 37008306 - 37008265
Alignment:
Q  487 gaagaagatgaatataaattccaaccaatgcgaaaatgacac 528  Q
    |||||||||||||||| |||||| |||||||||| |||||||    
T  37008306 gaagaagatgaatatatattccagccaatgcgaagatgacac 37008265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 4e-58; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 442 - 641
Target Start/End: Original strand, 51599250 - 51599448
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagtt 541  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  51599250 atgaaggttttatgaagatttgttgaagaagatgaaggtgagttggaagaagatgaatataaattccaaccaatgcgaaaatgacatgtgtgcttgagtt 51599349  T
Q  542 aacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||        ||||||||||||||| | |||||||||||||||   |||||||||||||| |||||||   |||||||||||||||| ||| ||||||    
T  51599350 aacg-tttttttaataaaattaacggaagggaccaatttatgtaacgaagacatatttaaagaactcaaacggactttttattaattataggatcaaagc 51599448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 490 - 641
Target Start/End: Complemental strand, 16962203 - 16962053
Alignment:
Q  490 gaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaaaag 589  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||         ||||||||||||||| | |||||||||||||||       
T  16962203 gaagatgaatataaattccaaccaatgcgaaaatgacatgtgtgcttgagttaac-atttttttaataaaattaacggaagggaccaatttatgtaacga 16962105  T
Q  590 agacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||||||||||||||||||||| | |||||||||||||||| ||||||||||    
T  16962104 agacatatttaaaggactcaaacagactttttattaattataggaccaaagc 16962053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 554 - 641
Target Start/End: Complemental strand, 51598091 - 51598004
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||| ||||| | |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  51598091 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagc 51598004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 51598362 - 51598429
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  51598362 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 51598429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 554 - 639
Target Start/End: Original strand, 16963354 - 16963439
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
    ||||||||| ||||| | ||||| |||||||||  |||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  16963354 aataaaattgacggaagggaccagtttatgtaacggagacatatttaaaggactcaaatgaactttttattaattatgagaccaaa 16963439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 16963066 - 16962999
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||||| |||||||||||||||||    
T  16963066 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatctgatgagttttgttgtt 16962999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 51599192 - 51599224
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  51599192 gtttagatttggatttcatatgataaaggtaaa 51599224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 106; Significance: 1e-52; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 456 - 641
Target Start/End: Complemental strand, 21709386 - 21709201
Alignment:
Q  456 aagatttgttgaagaagatgaaggtgaggaggaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaa 555  Q
    ||||||||||||| ||||||||||||||  |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||        ||    
T  21709386 aagatttgttgaaaaagatgaaggtgagttggaagaagatgaatataaattctaaccaatgcaaaaatgacacgtgtgcttgagttaacgttttttttaa 21709287  T
Q  556 taaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||||||| | |||||||||||||||   |||||||||||||||||| |||   |||||||||||||||||||||||||||    
T  21709286 taaaattaacggaagggaccaatttatgtaacgaagacatatttaaaggacttaaacggactttttattaattatgggaccaaagc 21709201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 487 - 641
Target Start/End: Original strand, 26025728 - 26025881
Alignment:
Q  487 gaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaacgnnnnnnnnaataaaattaacggatgagaccaatttatgtaa 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||| |||||||||||||||||    
T  26025728 gaagaagatgaatataaattccaaccaatgcgaaaatgacacgtgtgcttgagttaac-atttttttaataaaattaacggaagagaccaatttatgtaa 26025826  T
Q  587 aagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
      ||||||||||||||||||||||    |||||||||||||||||| | ||||||    
T  26025827 cggagacatatttaaaggactcaagcggactttttattaattatggaatcaaagc 26025881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 554 - 641
Target Start/End: Complemental strand, 26025017 - 26024930
Alignment:
Q  554 aataaaattaacggatgagaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    ||||||||| ||||| | |||||||||||||||  ||||||||||||||||||||||| | |||||||||||||||||||||||||||    
T  26025017 aataaaattgacggaagggaccaatttatgtaacggagacatatttaaaggactcaaacagactttttattaattatgggaccaaagc 26024930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 337 - 404
Target Start/End: Original strand, 26025287 - 26025354
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  26025287 atgataaagggtttagatttggatttcatatgataaatgtaaagttttatttgatgagttttgttgtt 26025354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 572 - 641
Target Start/End: Original strand, 21710547 - 21710616
Alignment:
Q  572 gaccaatttatgtaaaagagacatatttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||||||||||||||  |||||||||||||||||||||||   |||||||||||||||||||||||||||    
T  21710547 gaccaatttatgtaacggagacatatttaaaggactcaaacggactttttattaattatgggaccaaagc 21710616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 337 - 404
Target Start/End: Complemental strand, 21710259 - 21710193
Alignment:
Q  337 atgataatgggtttagatttggatttcataagataaaggtaaagttttatttgatgagttttgttgtt 404  Q
    ||||||| |||||||||||||||||||||| |||||| |||||||||| ||||||| |||||||||||    
T  21710259 atgataaagggtttagatttggatttcatatgataaatgtaaagtttt-tttgatgtgttttgttgtt 21710193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 442 - 477
Target Start/End: Original strand, 26025704 - 26025739
Alignment:
Q  442 atgaaggttttatgaagatttgttgaagaagatgaa 477  Q
    ||||||||||||||||||||||||||||||||||||    
T  26025704 atgaaggttttatgaagatttgttgaagaagatgaa 26025739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 596 - 641
Target Start/End: Original strand, 10990568 - 10990613
Alignment:
Q  596 atttaaaggactcaaataaactttttattaattatgggaccaaagc 641  Q
    |||||||||||||||| | ||||||||||| |||||||| ||||||    
T  10990568 atttaaaggactcaaacagactttttattacttatgggatcaaagc 10990613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Complemental strand, 21709447 - 21709415
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  21709447 gtttagatttggatttcatatgataaaggtaaa 21709415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 347 - 379
Target Start/End: Original strand, 26025648 - 26025680
Alignment:
Q  347 gtttagatttggatttcataagataaaggtaaa 379  Q
    |||||||||||||||||||| ||||||||||||    
T  26025648 gtttagatttggatttcatatgataaaggtaaa 26025680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 598 - 639
Target Start/End: Original strand, 36889719 - 36889760
Alignment:
Q  598 ttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
    |||||||| ||||||| |||||||||||||||||||||||||    
T  36889719 ttaaaggattcaaatagactttttattaattatgggaccaaa 36889760  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 598 - 639
Target Start/End: Complemental strand, 36888424 - 36888383
Alignment:
Q  598 ttaaaggactcaaataaactttttattaattatgggaccaaa 639  Q
    |||||||||||||| | ||||||||||| |||||||||||||    
T  36888424 ttaaaggactcaaacagactttttattagttatgggaccaaa 36888383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 453 - 486
Target Start/End: Original strand, 24648582 - 24648615
Alignment:
Q  453 atgaagatttgttgaagaagatgaaggtgaggag 486  Q
    |||||||||||||||||| |||||||||||||||    
T  24648582 atgaagatttgttgaagatgatgaaggtgaggag 24648615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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