View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_low_11 (Length: 299)
Name: NF17699_low_11
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_11 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 299
Target Start/End: Original strand, 34966064 - 34966331
Alignment:
| Q |
18 |
agtgtaaaggtgttaacgcgtgatcaatcaaataccatatttatatgaataggatagaataggattgcaccttgtaactttgaggtgaggtagactcctt |
117 |
Q |
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| T |
34966064 |
agtgtaaaggtgttaacgcgtgatcaatcaaataccatatttatatgaataggatagaataggattgcaccttgtaactttgaggtgaggtagactcctt |
34966163 |
T |
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| Q |
118 |
aatttgttgttactttgtataaatagaaatttatcgtatatgctagaaacaagagattaatttttaaatattgacagtgtaaaactttgttacacgtata |
217 |
Q |
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| T |
34966164 |
aatttgttgttactttgtataaatagaaatttatcgtatatgc--------------tactttttaaatattgacagtgtaaaactttgttacacgtata |
34966249 |
T |
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| Q |
218 |
tctaatcaaattatgttattttaccattttcttaggctagtttataaaaatatttgtaaattacctttttggtcctctaact |
299 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
34966250 |
tctaatcaaattatgttattttactattttcttaggctagtttataaaaatattggtaaattacctttttggacctctaact |
34966331 |
T |
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