View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_low_17 (Length: 249)
Name: NF17699_low_17
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_17 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-125; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 12 - 241
Target Start/End: Complemental strand, 10777830 - 10777601
Alignment:
| Q |
12 |
gacaaatttatacaacttgtttagttactgttgtttaatttattttaatgactgtaaaataattctaattatattctcccgcaaatttagacaaattatt |
111 |
Q |
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| T |
10777830 |
gacaaatttatacaacttgtttagttactgttgtttaatttattttaatgactgtaaaataattctaattatattctcccgcaaatttagacaaattatt |
10777731 |
T |
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| Q |
112 |
aattaattaaatatcataaacacatgtaataaacagagtctagtaccatatataaaacacattcatcaccaaaatgtttatttaatatgcaataacactc |
211 |
Q |
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| T |
10777730 |
aattaattaaatatcataaacacatgtaataaacagagtctagtaccatatataaaacacattcatcaccaaaaagtttatttaatatgcaataacactc |
10777631 |
T |
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| Q |
212 |
aagccaaacacacttcatccttgttcatct |
241 |
Q |
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| T |
10777630 |
aagccaaacacacttcatccttgttcatct |
10777601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 166 - 241
Target Start/End: Complemental strand, 10784458 - 10784384
Alignment:
| Q |
166 |
aaacacattcatcaccaaaatgtttatttaatatgcaataacactcaagccaaacacacttcatccttgttcatct |
241 |
Q |
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||||||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
10784458 |
aaacacattcatcacaaaaa-gtttatttaaaatgcaataacactcaagacaaacacacttcatccttgttcatct |
10784384 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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