View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17699_low_2 (Length: 576)
Name: NF17699_low_2
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 181; Significance: 2e-97; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 181; E-Value: 2e-97
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 6149112 - 6148916
Alignment:
| Q |
15 |
taatactttaacaaaatttattttaattaagggtttgcctaacttaactcgtacctttgttcttatctcgttctacttggaaagaaaatatgtaaaaagg |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
|
|
| T |
6149112 |
taatactttaacaaaatttattttaattaagggtttgtctaacttaactcgtacctttgttcttatctcgttctacttagaaagaaaaaatgtaaaaagg |
6149013 |
T |
|
| Q |
115 |
aaatttaaatagacaaaatatttttagggctttaacttcgcaccccacatacacccttctgttttcctctaagtatattatgttcaaggtttgtttg |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6149012 |
aaatttaaatagacaaaatatttttagggctttaacttcacaccccacatacacccttctgttttcctctaagtatattatgttcaaggtttgtttg |
6148916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 257 - 342
Target Start/End: Complemental strand, 6148870 - 6148785
Alignment:
| Q |
257 |
gacaaaagtattcacttctacatacacatatacaccacaacccaaaagccaaagccaatccatctctaaggttggactctgttaag |
342 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6148870 |
gacaaaagtattcacttctacatacacatatacaccacaacccaaaagccaaagccaatccatctctaaggttggactctgttaag |
6148785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 418 - 562
Target Start/End: Complemental strand, 6148709 - 6148572
Alignment:
| Q |
418 |
ctgttcagttgatatgttgtattttctttcgattaattactattagnnnnnnnnnnnnnnnnntcatccaagtcatatatatgtgatatgttgtgaacag |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
6148709 |
ctgttcagttgatatgttgtattttctttcgattaattactattagaaaaaaaaat-------tcatctaagtcatatatatgtgatatgttgtgaacag |
6148617 |
T |
|
| Q |
518 |
atgccatatacatatgatattgatacctcattttctcccaatttt |
562 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6148616 |
atgccatatacatatgatattgatacctcattttctcccaatttt |
6148572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University