View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_low_4 (Length: 487)
Name: NF17699_low_4
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 15 - 469
Target Start/End: Original strand, 52542831 - 52543285
Alignment:
| Q |
15 |
aacctgtgcaccagttgcatcccctttaataaccgtcggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
114 |
Q |
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| T |
52542831 |
aacctgtgcaccagttgcatcccctttaataactgttggggtcaagaacaccatcctaggattctccataccaccataaggaaaactaggtggcaaaacc |
52542930 |
T |
|
| Q |
115 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
214 |
Q |
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| T |
52542931 |
aacaaatcaaatctctcccactcataatttccaaacaatctttccccttccctaatcatatcctcagttccatcaaactctttagcagctgaatccaaca |
52543030 |
T |
|
| Q |
215 |
gttgagtcacagattcagcataaaccctagtcctgggccccacctccctgttatcaagctccccaactgcaaatgcaaaaaggtaaggtggaattggaag |
314 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52543031 |
gttgagtcacagcttcagcataaaccctagtcctgggccccacctccctgttatcaagctccccaactgcaaatgcaaaaaggtaaggtggaattggaag |
52543130 |
T |
|
| Q |
315 |
ttccatctcaaactcttccaccactctaccttgccaagaattcccaaaacactcgtcgtcaaccaatgattcgcggcgcgccacatgttttgcagccatg |
414 |
Q |
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|||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52543131 |
ttccatctcaaactcttccaccactctacctttggacgaattcccaaaacactcgtcgtcaaccaatgattcgcggagcgccacatgttttgcagccata |
52543230 |
T |
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| Q |
415 |
acagccgtcaattctttgggaatattcaaccgggcagaataacaaaccctaatgg |
469 |
Q |
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| T |
52543231 |
acagccgtcaattctttgggaatattcaaccgggccgaataacaaaccctaatgg |
52543285 |
T |
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