View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17699_low_5 (Length: 473)
Name: NF17699_low_5
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 426; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 426; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 45283701 - 45283256
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgctgttcgcaaaaatggtgaagacccccaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
45283701 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgccgttcgcaaaaatggtgaagaccccgaggttcaaactcaacaaagaaatcttagaattat |
45283602 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45283601 |
gtgccaaaactcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
45283502 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
45283501 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgact |
45283402 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatat |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
45283401 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaatcgctgatat |
45283302 |
T |
|
| Q |
411 |
gagaaattggttgagtgcggttatctcttacagacaagcttgtatg |
456 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45283301 |
gaggaattggttgagtgcggttatctcttacagacaagcttgtatg |
45283256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 45271927 - 45271482
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgctgttcgcaaaaatggtgaagacccccaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45271927 |
ttattctcgttgtaggtgttatcatcggtgttgttgtcgacattcgcaaaaatggtgaagaccctaaggttcaaactcaacaaagaaatcttagaattat |
45271828 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
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|
| T |
45271827 |
gtgccaaaacgcacaagaccagaaactctgtcatgacactcttagctctgtgcgtggcgccgatgccgctgaccctaaggcatacatagcagcagccgtg |
45271728 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||| |
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|
| T |
45271727 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaagaaaaatggtgccaagatggctcttgatgact |
45271628 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatat |
410 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
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|
| T |
45271627 |
gcaaagacttgatgcaattcgctttggacagtcttgacctctccaacaactgtgttcgtgacaacaacattgaagctgttcatgaccaaactgctgatat |
45271528 |
T |
|
| Q |
411 |
gagaaattggttgagtgcggttatctcttacagacaagcttgtatg |
456 |
Q |
| |
|
||| |||||||||||||| ||||||||||||| ||||| ||||||| |
|
|
| T |
45271527 |
gaggaattggttgagtgcagttatctcttacaaacaaggttgtatg |
45271482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 45275460 - 45275015
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgctgttcgcaaaaatggtgaagacccccaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
45275460 |
ttattctcgttgtaggtgttatcatcggtgttgttgtcgacattcacaaaaatggtaaagaccctgaggttcaaactcaacaaagaaatcttagaattat |
45275361 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||| |
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|
| T |
45275360 |
gtgccaaaacgcacaagaccagaaactctgccatgaaactcttagctctgtgcatggcgccgatgccgctgaccctaaggcatacatagcagccgccgtg |
45275261 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
45275260 |
aaggcagccactgacaatgtcatgaacgcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttgatgact |
45275161 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||| ||| || ||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
45275160 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctcaaacaattgtcttagtgacaacaacattcaagctgttcatgaccaaactgctgatat |
45275061 |
T |
|
| Q |
411 |
gagaaattggttgagtgcggttatctcttacagacaagcttgtatg |
456 |
Q |
| |
|
||| |||||||||||||| || || || ||||||||||| |||||| |
|
|
| T |
45275060 |
gaggaattggttgagtgcagtcatatcctacagacaagcctgtatg |
45275015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 45295089 - 45294644
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgctgttcgcaaaaatggtgaagacccccaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||| ||||| |||||||||||||| |||| | |||| |
|
|
| T |
45295089 |
ttatcctcgttgtaggtgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctgaggttaaaactcaacaaagatctcttcaagttat |
45294990 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||| ||| | |||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| | || |
|
|
| T |
45294989 |
gtgccaaaatgcagatgaccaaaaactctgccatgaaacacttagctctgtgcgtggcgccgacgccgctgaccctaaggcatacatagcagccgctgta |
45294890 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
45294889 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgact |
45294790 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45294789 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatat |
45294690 |
T |
|
| Q |
411 |
gagaaattggttgagtgcggttatctcttacagacaagcttgtatg |
456 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45294689 |
gaggaattggttgagtgcagttatctcttacagacaagcttgtatg |
45294644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 456
Target Start/End: Complemental strand, 45304049 - 45303604
Alignment:
| Q |
11 |
ttattctcgttgtaggtgttgccatcggtgttgttgtcgctgttcgcaaaaatggtgaagacccccaggttcaaactcaacaaagaaatcttagaattat |
110 |
Q |
| |
|
|||| ||||||||||||||||||||||| || ||| |||||||| |||||||||||||||||| ||||| |||||||||||||| |||| | |||| |
|
|
| T |
45304049 |
ttatcctcgttgtaggtgttgccatcggcgtggtttgcgctgttcacaaaaatggtgaagaccctgaggttaaaactcaacaaagatctcttcaagttat |
45303950 |
T |
|
| Q |
111 |
gtgccaaaacgcacaagaccaaaaactctgtcatgaaactcttagctctgtgcatggcgccgatgccgctgacccgaaggcatacatagcagcctccgtg |
210 |
Q |
| |
|
||||||||| ||| | |||||||||||||| |||||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||| | || |
|
|
| T |
45303949 |
gtgccaaaatgcagatgaccaaaaactctgccatgaaacacttagctctgtgcgtggcgccgacgccgctgaccctaaggcatacatagcagccgctgta |
45303850 |
T |
|
| Q |
211 |
aaggcagccaccgacaatgtcattaaggcctttaacatgagtgaaaggctcaccactgagtatggaaaggaaaatggtgccaagatggctcttaatgact |
310 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
45303849 |
aaggcagccactgacaatgtcattaaggcctttaacatgagtgacaggctcaccactgagtatggaaaggaagatggtaccaagatggctcttaatgact |
45303750 |
T |
|
| Q |
311 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacaacaacattcaagctgttcatgaccaaaccgctgatat |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
45303749 |
gcaaggacttgatgcaattcgctttggacagtcttgacctctccaccaagtgtgttcatgacagcaacattcaagctgttcatgaccaaaccgctgatat |
45303650 |
T |
|
| Q |
411 |
gagaaattggttgagtgcggttatctcttacagacaagcttgtatg |
456 |
Q |
| |
|
||| |||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
45303649 |
gaggaattggttgagtgcagttatctcttacagacaagcttgtatg |
45303604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 373 - 437
Target Start/End: Complemental strand, 38588718 - 38588654
Alignment:
| Q |
373 |
aacaacattcaagctgttcatgaccaaaccgctgatatgagaaattggttgagtgcggttatctc |
437 |
Q |
| |
|
|||||||||||||| ||||||| ||||| ||||| | || |||||||||||||| |||||||| |
|
|
| T |
38588718 |
aacaacattcaagccattcatgatcaaacacctgattttaggaattggttgagtgctgttatctc |
38588654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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