View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_low_6 (Length: 445)
Name: NF17699_low_6
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 362; Significance: 0; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 14 - 412
Target Start/End: Complemental strand, 10916251 - 10915853
Alignment:
| Q |
14 |
ttattcttgtttttattacagagaaagtcaactgtttagataatgctgattgtctagaagtttcatgtctcaatggttcgaatgcggagtgtgttggaaa |
113 |
Q |
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| T |
10916251 |
ttattcttgtttttattacagagaaagtcaactgtttagatgatgctgattgtctagaagtttcatgtctcaatggttcgaatgcggagtgtgttggaaa |
10916152 |
T |
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| Q |
114 |
cagttgtgtatgtgtatttgttttttacagagaaaactttgatgagcagtttcgtcgatgagttatcatttacctattttgttgccatctaataatttga |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10916151 |
cagttgtgtatgtgtatttgttttttacagagaaaactttgatgagcagtttcgtcgatgagttatcatttacctattttgttgccatctaatgatttga |
10916052 |
T |
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| Q |
214 |
atttctttcnnnnnnnaatttcaagaacattatagtattttcttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttaga |
313 |
Q |
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| T |
10916051 |
atttatttctttttttaatttcaagaacattatagtattttcttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttaga |
10915952 |
T |
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| Q |
314 |
ttgtcttctctctttattttagagatatgacacatgcgtgctcttcaattcagacatatcgaattttctttcataacctaccgcttataatactttaaa |
412 |
Q |
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| T |
10915951 |
ttgtcttctctctttattttagagatacgacacatgcgtgctcttcaattcagacatatcgaattttctttcataacctaccgcttataatactttaaa |
10915853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 237 - 429
Target Start/End: Complemental strand, 10921105 - 10920912
Alignment:
| Q |
237 |
agaacattatagtattttcttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtctt---ctctctttatttt |
333 |
Q |
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| T |
10921105 |
agaacattagagttatttcttgtactcaaagatagtggtaatgaaattaaataaagaagcaacaaatattatttagattgtcttattctctttttacttt |
10921006 |
T |
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| Q |
334 |
agagatatgacacatgcgtgctcttcaattcagacatatcgaattttctttcataacctaccgcttataatactttaaatagataagtttaaaaat |
429 |
Q |
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| T |
10921005 |
agagatacgaca--tgcatgttcttcaattcagacatatcaaatgttctttcataccctacggcttataatactttaaatagataagtttaaaaat |
10920912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 14 - 128
Target Start/End: Complemental strand, 10921273 - 10921159
Alignment:
| Q |
14 |
ttattcttgtttttattacagagaaagtcaactgtttagataatgctgattgtctagaagtttcatgtctcaatggttcgaatgcggagtgtgttggaaa |
113 |
Q |
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| T |
10921273 |
ttattctcgtttttattacagaggaagtcaactgtttagatgatgctgattgtctagaagttttatgtgtctttggttcgaaagcggagtgtgttgtaaa |
10921174 |
T |
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| Q |
114 |
cagttgtgtatgtgt |
128 |
Q |
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| T |
10921173 |
catttgtatatgtgt |
10921159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 262 - 320
Target Start/End: Complemental strand, 10925982 - 10925924
Alignment:
| Q |
262 |
tctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtctt |
320 |
Q |
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| T |
10925982 |
tctaagataatggtaatgaaattaaacaagacagcaataaatattatttagattgtctt |
10925924 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 275 - 332
Target Start/End: Complemental strand, 3400429 - 3400372
Alignment:
| Q |
275 |
taatgaaattaaataaagcagcaacaaatattatttagattgtcttctctctttattt |
332 |
Q |
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| T |
3400429 |
taatgaaatgaaataagacagcaacaaatattatttaaattatcttctctttttattt |
3400372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 341
Target Start/End: Original strand, 797376 - 797444
Alignment:
| Q |
276 |
aatgaaattaaataaagcagcaacaaatattatttagattgtcttct---ctctttattttagagatat |
341 |
Q |
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| T |
797376 |
aatgaaatgaaataagacagcaacaaatattatttagattatcttcttctctttttattttagatatat |
797444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 341
Target Start/End: Complemental strand, 10946214 - 10946126
Alignment:
| Q |
256 |
ttgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtc---ttctctctttattttagagatat |
341 |
Q |
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| T |
10946214 |
ttgtactctaagataatggtaatgaaatcaaacaagacatcaataaatattatttaaattgtcttattatctctttatttttgagatat |
10946126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 257 - 322
Target Start/End: Original strand, 29797329 - 29797394
Alignment:
| Q |
257 |
tgtattctaagatagtggtaatgaaattaaataaagcagcaacaaatattatttagattgtcttct |
322 |
Q |
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|||||||||||| | || ||||||||| |||||| ||||| ||||||||||||||||||||||| |
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| T |
29797329 |
tgtattctaagaaaatgataatgaaatgaaataagatagcaaaaaatattatttagattgtcttct |
29797394 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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