View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_low_7 (Length: 441)
Name: NF17699_low_7
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 14 - 373
Target Start/End: Original strand, 37742082 - 37742441
Alignment:
| Q |
14 |
aaatgaaggatttccattaaccaaaacacgatcacttagactaagccaaggtgctaccattacaggactactctctaataaaagaaaagcagccatgcta |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||| |
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| T |
37742082 |
aaatgaaggatttccattaaccaaaacacgatcacttagactaagccaaggtgctaccattacaggactactctctaataaaagaatagcaaccatgcta |
37742181 |
T |
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| Q |
114 |
tgttcaccgtttcgaatcaaacgtcgagaaagtggtgtttgaacatagctaggatagtcatcatggttggtattcatggttttaaatattttcctatgta |
213 |
Q |
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| T |
37742182 |
tgttcaccgtttcgaatcaaacgtcgagaaagtggtgtttgaacatagctaggatagtcatcatggttggtattcatggttttaaatattttcctatgta |
37742281 |
T |
|
| Q |
214 |
ctaggaatctcatgatacggttaacatatgaagaatcacattttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37742282 |
ctaggaatctcatgatacggttaacatatgaagaatcacattttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttc |
37742381 |
T |
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| Q |
314 |
agctataccaagttcaattgcacatttcactacagatagctcaacaaaaccaaatatgta |
373 |
Q |
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| T |
37742382 |
agctataccaagttcaattgcacatttcactacagctagctcaacaaaaccaaatatgta |
37742441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 119; Significance: 1e-60; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 139 - 373
Target Start/End: Original strand, 8680019 - 8680253
Alignment:
| Q |
139 |
gagaaagtggtgtttgaacatagctaggatagtcatcatggttggtattcatggttttaaatattttcctatgtactaggaatctcatgatacggttaac |
238 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||| ||||| |||| ||||||||||||||| ||||||| |
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| T |
8680019 |
gagaaagtggtgtttgaacatagtaaggatagttttcatggttggtagatatggttttgaatatcttcctgtgtattaggaatctcatgatgcggttaag |
8680118 |
T |
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| Q |
239 |
atatgaagaatcacattttagagttgatgataactctagtagtgacatgggttttttgtgcttttcaatggcttcagctataccaagttcaattgcacat |
338 |
Q |
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|||||||| || ||| |||||||||||||||||||| ||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
8680119 |
atatgaaggattgcatcctagagttgatgataactctaatagtgacattggtttcccatgcttttcaatggcttcagctataccaagttcaattgcacat |
8680218 |
T |
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| Q |
339 |
ttcactacagatagctcaacaaaaccaaatatgta |
373 |
Q |
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||||| |||| | | ||| |||||||||||||||| |
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| T |
8680219 |
ttcaccacagcttggtcagcaaaaccaaatatgta |
8680253 |
T |
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