View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17699_low_8 (Length: 440)
Name: NF17699_low_8
Description: NF17699
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17699_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 28431258 - 28431442
Alignment:
| Q |
1 |
aatgcatcaaatgaagctactaaatttatatttagaaactctatttattgttttttgggttttattcaggtgaaatggctaaacaagcagctctccaaat |
100 |
Q |
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| T |
28431258 |
aatgcatcaaatgaagctactaaatttatatttagaaactctatttattgttttttgggttttattcaggtgaaatggctaaacaagcagctctccaaat |
28431357 |
T |
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| Q |
101 |
tgtggccatttgtggcagatgtgagtaaacttatttgtataataatctagagcagtctgtgtgatgtttattgatttcttactag |
185 |
Q |
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| T |
28431358 |
tgtggccatttgtggcagatgtgagtaaacttatttgtataataatctagagcagtctgtgtgatgtttattgatttcttactag |
28431442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 246 - 421
Target Start/End: Original strand, 28431503 - 28431678
Alignment:
| Q |
246 |
ggtatggattacattgcttcaaacaccccaattgttcagtttgaacgagagaaagtggattagaactgttgattatgggtagacactaaatcccggattc |
345 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28431503 |
ggtatggattacattgcttcaaacaccccaattgttcagtttgaacgagagaaagtggattagaactgttgattatgggtagacactaaatcccggattc |
28431602 |
T |
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| Q |
346 |
gtaattgattgccaacatagttcagaaactcaaatcaaaaccacaaaaactggattctgataaaacctatgccgag |
421 |
Q |
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| T |
28431603 |
gtaattgattgccaacatagttctgaaactcaaatcaaaaccacaaaaacttgattctgataaaacctatgccgag |
28431678 |
T |
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