View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17700_high_1 (Length: 357)
Name: NF17700_high_1
Description: NF17700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17700_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 14 - 342
Target Start/End: Complemental strand, 18944597 - 18944269
Alignment:
| Q |
14 |
ataattctcccgtgatgcaatagcattgccaatgttttgcacaaaacctccgatagcagtgatgaaattgagactaatttgttttgaaattgtttgcaat |
113 |
Q |
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| T |
18944597 |
ataattctccagtgatgcaatagcattgccaatgttttgcacaaaacctccgatggcagtgatgaaattgagactaatttgtttcgaaattgtttgcaat |
18944498 |
T |
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| Q |
114 |
ttctttctatccaaattctccaaataatgtgtagaatagaagaagtcatcatctgttgcacataaggactccatctgccagtgcatcccatgatagagcc |
213 |
Q |
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| T |
18944497 |
ttctttctatccaaatactccaaataatgtgtagaatagaagaagtcatcatctgttgcacataaggactccatctgccagtgcatcccatgatagagcc |
18944398 |
T |
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| Q |
214 |
atgccaactagtagttgtatatatcaatgtgttgattaacgtttcctcattcttcctgcaaaaacaacatactgacacaatagctcatcctatttctttg |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
18944397 |
atgccaactagtagttgtatatatcaatgtgttgattaatgtttcctcattcttcctgcaaaaacaacatactgacacaatagctcatcctatttttttg |
18944298 |
T |
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| Q |
314 |
aggttttcataagttggtaatctcctttg |
342 |
Q |
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| T |
18944297 |
aggttttcataagttggtaatctcctttg |
18944269 |
T |
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