View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17700_high_5 (Length: 318)
Name: NF17700_high_5
Description: NF17700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17700_high_5 |
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| [»] scaffold1041 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 25357458 - 25357755
Alignment:
| Q |
1 |
aaatagttcaattgattgtttgttcattttttctttctaatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnn |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25357458 |
aaatagttcaattgattgtttgttcattttttctttctaatttctaacaggagtttttttaatggtaaattttgtatgtaaattgttgtattagtttttt |
25357557 |
T |
|
| Q |
101 |
nnnctttattgggatttaaacccaatatctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctatcgtaagttatat |
200 |
Q |
| |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
25357558 |
tt-ctttattggaatttaaacccaatatctcctacttcttaactcttagctaaaaataattcagctacccagatcccttcatttctaacgtaagttatat |
25357656 |
T |
|
| Q |
201 |
taaatctttttgattcatctgggatgaaccttttcttatcaactcactctcnnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatt |
300 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
25357657 |
taaatctttttgattcatttgggatgaaccttttcttatcaactgagtct---ttttttatcaagaatgctattaatatttttgaacgttgagcattatt |
25357753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 25390503 - 25390801
Alignment:
| Q |
1 |
aaatagttcaattgattgtttgttcattttttctttctaatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnn |
100 |
Q |
| |
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||||||||||||||||||||| || |||||| ||| |||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
25390503 |
aaatagttcaattgattgtttttt--ttttttttttataatttctaacaggagtttttttaatggtaaattttgtatgtaaattgttgtattagttattt |
25390600 |
T |
|
| Q |
101 |
nnn--ctttattgggatttaaacccaatatctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctatcgtaagttat |
198 |
Q |
| |
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|||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25390601 |
tttttctttatcgggatttaaacccaatatcttctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacgtaagttat |
25390700 |
T |
|
| Q |
199 |
attaaatctttttgattcatctgggatgaaccttttcttatcaactcactctcnnnnnnnnatcaagaatgctattaatatttttgaacgttgggcatta |
298 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||||||||||||||| | | ||||| |
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| T |
25390701 |
attaaatctttttgattcatctgggatgaaccttttcttatcaactcagtct---ttttttatcaagaatgttattaatatttttgaacggttgccatta |
25390797 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 25676812 - 25677106
Alignment:
| Q |
1 |
aaatagttcaattgattgtttgttcattttttctttctaatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnn |
100 |
Q |
| |
|
||||||||||||||||||||| |||||| || |||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25676812 |
aaatagttcaattgattgttt-----tttttttttaataatttctaacaggagtttttttaatgctaaattttgtatgtaaattgttgtattagtttttt |
25676906 |
T |
|
| Q |
101 |
nnn-ctttattgggatttaaacccaatatctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctatcgtaagttata |
199 |
Q |
| |
|
|||||| ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
25676907 |
ttttctttatcaggatttaaatccaatatctcctacttcttaactctcagctaaaaatagttcagctacccggatcccttcatttctaacgtaagttata |
25677006 |
T |
|
| Q |
200 |
ttaaatctttttgattcatctgggatgaaccttttcttatcaactcactctcnnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattat |
299 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||| |
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| T |
25677007 |
ttaaatctttttgattcatctgggatgaaccttttcttatcaactcagtct---ttttttatcaagaatgctattaatatttttgaatgttgggcattat |
25677103 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 104 - 302
Target Start/End: Original strand, 25493861 - 25494057
Alignment:
| Q |
104 |
ctttattgggatttaaacccaatatctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctatcgtaagttatattaa |
203 |
Q |
| |
|
|||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
25493861 |
ctttatcggaatttaaacccaatatctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctaacttaagttatattaa |
25493960 |
T |
|
| Q |
204 |
atctttttgattcatctgggatgaaccttttcttatcaactcactctcnnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttc |
302 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25493961 |
atctttttgattcatctaggatgaaccttttcttatcaactcagtct--tttttttatcaagaatgctattaatatttttgaacgttgggcattatttc |
25494057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 127 - 302
Target Start/End: Original strand, 25663660 - 25663835
Alignment:
| Q |
127 |
atctcctacttcttaactcttagctaaaaatagttcagctacccagatcccttcatttctatcgtaagttatattaaatctttttgattcatctgggatg |
226 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| || |
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| T |
25663660 |
atctcctacttcttaacccttagctaaaaatagttcagctatccagatcccttcatttctaacgcaagttatattaaatctttttgattcatctggg-tg |
25663758 |
T |
|
| Q |
227 |
aaccttttcttatcaactcactc-tcnnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttc |
302 |
Q |
| |
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|| ||||| ||||||||||| || | || ||||||||||||||||||||||||| |||||||||||||| |
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| T |
25663759 |
aatctttttttatcaactcagtctttttttttttatgaagaatgctattaatatttttgaactttgggcattatttc |
25663835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 25493774 - 25493824
Alignment:
| Q |
1 |
aaatagttcaattgattgtttgttcattttttctttctaatttctaacaggag |
53 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||| |||||||||||||||| |
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|
| T |
25493774 |
aaatagttcaattgattgtttgtttattttt--tttataatttctaacaggag |
25493824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 94
Target Start/End: Original strand, 25663238 - 25663271
Alignment:
| Q |
61 |
aatggtaaattttgtatgtaaattgttgtattag |
94 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
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|
| T |
25663238 |
aatggtaaattttctatgtaaattgttgtattag |
25663271 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1041 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: scaffold1041
Description:
Target: scaffold1041; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 38 - 302
Target Start/End: Complemental strand, 1590 - 1323
Alignment:
| Q |
38 |
taatttctaacaggagnnnnnnnaatggtaaattttgtatgtaaattgttgtattagnnnnnnnnn-ctttattgggatttaaacccaatatctcctact |
136 |
Q |
| |
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|||||||||||||||| |||||||||||||||| ||||||||||||||||| |||||| |||||||||||||||||||||||||| |
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| T |
1590 |
taatttctaacaggagtttttttaatggtaaattttgtacgtaaattgttgtattagttttttttttctttatcgggatttaaacccaatatctcctact |
1491 |
T |
|
| Q |
137 |
tcttaactcttagctaaaaatagttcagctacccagatcccttcatttctatcgtaagttatattaaatctttttgattcatctgggatgaaccttttct |
236 |
Q |
| |
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||||||||||||| ||||||||||||||| ||||||||||||||||||||| | ||||||| ||||||||||||||||| |||||||||||||||||||| |
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|
| T |
1490 |
tcttaactcttagttaaaaatagttcagccacccagatcccttcatttctaacttaagttagattaaatctttttgatttatctgggatgaaccttttct |
1391 |
T |
|
| Q |
237 |
tatcaactca--ctctcnnnnnnnnatcaagaatgctattaatatttttgaacgttgggcattatttc |
302 |
Q |
| |
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|||||||||| || | ||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
1390 |
tatcaactcagtcttttttttttttatcaagaatgctattaatatttttgaacgttggacattatttc |
1323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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