View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17700_low_2 (Length: 333)
Name: NF17700_low_2
Description: NF17700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17700_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 318
Target Start/End: Complemental strand, 51530534 - 51530217
Alignment:
| Q |
1 |
aatgaaaatctgtttatatgtttctgagagatgtgcatttgtatcgggaagaagacgatgagtggccaaaatccaaatgctccaagtaatgcaagaaact |
100 |
Q |
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| T |
51530534 |
aatgaaaatctgtttatatgtttctgagagatgtgcatttgtatcgggaagaagacgatgagtggccaaaatccaaatgctccaagtaatgcaagaaact |
51530435 |
T |
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| Q |
101 |
cgttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagttgatgttgaatgttaaagaacc |
200 |
Q |
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| T |
51530434 |
cgttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagttgatgttgaatgttaaagaacc |
51530335 |
T |
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| Q |
201 |
aattttgtttgggtattccttatgtatgaaagatgattgtggccacatcatgttagcacccatttcaactatacgaaatattggttgagctaaaacctgc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51530334 |
aattttgtttgggtattccttatgtatgaaagatgattgtggccacatcatgttagcacccatttcaactatacgaaatattggttgagctaaaacctgc |
51530235 |
T |
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| Q |
301 |
atcattataacaacatct |
318 |
Q |
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|||||||||||||||||| |
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| T |
51530234 |
atcattataacaacatct |
51530217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 73 - 193
Target Start/End: Original strand, 12029492 - 12029612
Alignment:
| Q |
73 |
ccaaatgctccaagtaatgcaagaaactcgttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaa |
172 |
Q |
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| T |
12029492 |
ccaattgctccaagtagagcaagaatttgattgaaaaatggcattgccatggcaagagttgttcctagtatcacaaatattgtcctccaaattaacctaa |
12029591 |
T |
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| Q |
173 |
ataagttgatgttgaatgtta |
193 |
Q |
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| T |
12029592 |
acaagttcaagttgattgtta |
12029612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 103 - 179
Target Start/End: Complemental strand, 243913 - 243837
Alignment:
| Q |
103 |
ttgaagaatggcattgccatggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagtt |
179 |
Q |
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||||| ||||||||||||||||||| |||||| | | ||||||||||| |||||||||||||| ||||| ||||| |
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| T |
243913 |
ttgaaaaatggcattgccatggcaagaactgttcctacaatcacaaatatcgtcctccaaattagcctaaacaagtt |
243837 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 179
Target Start/End: Original strand, 221203 - 221360
Alignment:
| Q |
22 |
ttctgagagatgtgcatttgtatcgggaagaagacgatgagtggccaaaatccaaatgctccaagtaatgcaagaaactcgttgaagaatggcattgcca |
121 |
Q |
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||||||| |||||||||||||| || |||||||| | | ||||| |||||||| ||||| | | || ||||| | ||||| ||||||||||||| |
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| T |
221203 |
ttctgagcaatgtgcatttgtataggaaagaagacaactaatggcccaaatccaatcgctcccaacagagctagaaattgattgaaaaatggcattgcca |
221302 |
T |
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| Q |
122 |
tggcaataactgtggccattatcacaaatattgtcctccaaattagtctaaataagtt |
179 |
Q |
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|||||| || || || | |||||||||||| ||||||||||||| ||||| ||||| |
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| T |
221303 |
tggcaagaatggttgctagtatcacaaatatcgtcctccaaattaacctaaacaagtt |
221360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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