View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17700_low_4 (Length: 321)
Name: NF17700_low_4
Description: NF17700
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17700_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 291; Significance: 1e-163; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 315
Target Start/End: Complemental strand, 20651921 - 20651627
Alignment:
| Q |
21 |
cacggcaaggacttaaggaatttcaaaatgagatcaattttcattcattttatcacatgaatttagtgtcattgttgggctattgccaagagagcattga |
120 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20651921 |
cacggcaaggacttaaggaatttcaaaatgagatcaattttcattcattttatcacatgaatttagtgtcattgttgggctattgccaagagagcattga |
20651822 |
T |
|
| Q |
121 |
acttatacttgtgtatgaatacatggatcaaggtccactttgtgatcatttatacaagaaacagaagcaaccacttccatggaataaaagactagagatt |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20651821 |
acttatacttgtgtatgaatacatggatcaaggtccactttgtgatcatttatacaagaaacagaagcaaccacttccatggaataaaagactagagatt |
20651722 |
T |
|
| Q |
221 |
tgtgttggtgcagctagaggaatccattaccttcatacaggtagaaagaatccggtgattcaccgcgatataaagtcgtcgaacatattcttgga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20651721 |
tgtgttggtgcagctagaggaatccattaccttcatacaggtagaaagaatccggtgattcaccgcgatataaagtcgtcgaacatattattgga |
20651627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 23 - 315
Target Start/End: Complemental strand, 20635806 - 20635514
Alignment:
| Q |
23 |
cggcaaggacttaaggaatttcaaaatgagatcaattttcattcattttatcacatgaatttagtgtcattgttgggctattgccaagagagcattgaac |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20635806 |
cggcaaggacttaaggaatttcaaaatgagatcaattttcattcattttatcacatgaatttagtgtcattgttgggctattgccaagagagcattgaac |
20635707 |
T |
|
| Q |
123 |
ttatacttgtgtatgaatacatggatcaaggtccactttgtgatcatttatacaagaaacagaagcaaccacttccatggaataaaagactagagatttg |
222 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20635706 |
ttatacttgtgtatgaatacatggatcaaggtccactttgtgatcatttatacaagaaacagaagcaaccacttccatggaataaaagactagagatttg |
20635607 |
T |
|
| Q |
223 |
tgttggtgcagctagaggaatccattaccttcatacaggtagaaagaatccggtgattcaccgcgatataaagtcgtcgaacatattcttgga |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
20635606 |
tgttggtgcagctagaggaatccattaccttcatacaggtagaaagaatccggtgattcaccgcgatataaagtcgtcgaacatattattgga |
20635514 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University