View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17701_high_1_N (Length: 519)
Name: NF17701_high_1_N
Description: NF17701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17701_high_1_N |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 8158334 - 8158841
Alignment:
| Q |
1 |
aatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158334 |
aatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagctt |
8158433 |
T |
|
| Q |
101 |
aatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagctctt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158434 |
aatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagctctt |
8158533 |
T |
|
| Q |
201 |
gtggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagatatg-aagc |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
8158534 |
gtggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagtacccaaagatatgcaagc |
8158633 |
T |
|
| Q |
300 |
ctttgtgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtct |
399 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8158634 |
ctttgtgttgaaaaaaagacacgaactcattgaaattgtatcagagattgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtct |
8158733 |
T |
|
| Q |
400 |
tatcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatataaggggatagaagtatttatggagg |
499 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
8158734 |
tatctggatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcataagtgatgagagatatgaggggatagaagtatttatggagg |
8158833 |
T |
|
| Q |
500 |
gtgtaatt |
507 |
Q |
| |
|
|||||||| |
|
|
| T |
8158834 |
gtgtaatt |
8158841 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 260; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 4085149 - 4084633
Alignment:
| Q |
1 |
aatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||| | |||||||||||||||||||||||| |
|
|
| T |
4085149 |
aatgacaagatttcaacttccaaggcttatatttattgacgatcttgatcagaaaggagcagatctatggaacatcgtagatcaagtaaaatctaagctt |
4085050 |
T |
|
| Q |
101 |
aatcatcgttgtgctgcaattcaagttccaatatg---cattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagct |
197 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| | |
|
|
| T |
4085049 |
aatcatcgttgtgctgcaattcaagttccaatacgaagcattgacgattgttatattggatttgttgatcttgttaagttaaaggcatacttttttacgt |
4084950 |
T |
|
| Q |
198 |
ct--------------tg-tggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaagagaagt |
282 |
Q |
| |
|
|| || | ||| ||||||||||| ||||||||||||||||||| ||||| ||||||||| ||||||||||| ||| | |
|
|
| T |
4084949 |
ctaaatctaaaccttttgatagaccttttgatcttgtcaacaagttaaaggcctaccttttttgctctgaaacgtctgattatgacaatg---------t |
4084859 |
T |
|
| Q |
283 |
acccaaagatatgaa-gcctttgtgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggc |
381 |
Q |
| |
|
||| |||| ||||| |||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4084858 |
acctgaagaaatgaaagcctttgtgttgaaaaaaagacgcgaactcattgaaattgtatcagaggttgatgataaaatttatgaagctcttcatggtggc |
4084759 |
T |
|
| Q |
382 |
agccaaattccagagtcttatcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatataagggga |
481 |
Q |
| |
|
||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
4084758 |
agccaaattccagagtcttatctcgatggtgcaattcgtagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatatgaggggt |
4084659 |
T |
|
| Q |
482 |
tagaagtatttatggagggtgtaatt |
507 |
Q |
| |
|
|| || |||||||||||||||||||| |
|
|
| T |
4084658 |
taaaactatttatggagggtgtaatt |
4084633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 508
Target Start/End: Complemental strand, 44317682 - 44317159
Alignment:
| Q |
1 |
aatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| || ||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
44317682 |
aatgacaagatttcaacttccaaggcttatatttattgacgatctttatgaggaaggagcagatctatggaacattgtagatcaagtaaaatctaagctt |
44317583 |
T |
|
| Q |
101 |
aatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagctct- |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||| ||||||||| |||| | || |
|
|
| T |
44317582 |
aatcatcgttgtgctgcaattcaagttccaatacacattgacgattgttatattggatttgttgatcttgttaagttagaggcctactattttctcccta |
44317483 |
T |
|
| Q |
200 |
---tg-----tggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatg--caa----gagaagtacc |
285 |
Q |
| |
|
|| | |||||||||||||| ||||||||||||||| |||||||||| |||||||| |||| ||||| | |||| ||| |||||||||| |
|
|
| T |
44317482 |
aaatgtttgttagactttttgatcttctcaacaagttaaaggcttacttttttccctctgaaacaccttattataaggatgtacaagtaggagaagtacc |
44317383 |
T |
|
| Q |
286 |
caaagatatg-aagcctttgtgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagc |
384 |
Q |
| |
|
| |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||| ||| |
|
|
| T |
44317382 |
cgaagatatgcaagcctttgtgttgaagaaaagacacgaactcattcaaattgtatcagaggttgatgataaactttctgaagcttttcatggtggaagc |
44317283 |
T |
|
| Q |
385 |
caaattccagagtcttatcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatataaggggatag |
484 |
Q |
| |
|
||||||| ||||||| ||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||| | |||||||||||| || ||||| ||| |
|
|
| T |
44317282 |
caaattctagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatctttagtgatgagagaaatgaggggttag |
44317183 |
T |
|
| Q |
485 |
aagtatttatggagggtgtaattg |
508 |
Q |
| |
|
|| ||||||||||||||||||||| |
|
|
| T |
44317182 |
aactatttatggagggtgtaattg |
44317159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 458
Target Start/End: Complemental strand, 44307512 - 44307027
Alignment:
| Q |
1 |
aatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagctt |
100 |
Q |
| |
|
|||||||||||||||| |||||| | |||||||||| ||||| |||| | || ||||||||||||||||||| || | ||||||||||||||||||||| |
|
|
| T |
44307512 |
aatgacaagatttcaatttccaatgtttatatttatagacgatattgagctggaaggagcagatccatggaacttttttgatcaagtaaaatctaagctt |
44307413 |
T |
|
| Q |
101 |
aatcatcgttgtgctgcaattcaagttccaat---atgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctacttttttagct |
197 |
Q |
| |
|
|||||||| ||||||||||||||||||||| | | ||||||||||||||||| |||||||||||||||| |||||||||||||||| || |||| || |
|
|
| T |
44307412 |
aatcatcgctgtgctgcaattcaagttccattacgaagcattgacgattgttatattggatttgttgatctcgtcaagttaaaggcctcctattttccct |
44307313 |
T |
|
| Q |
198 |
ct---------------tgtggactttttga---tcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacgatg--caag- |
276 |
Q |
| |
|
|| | | || ||||||| |||||||||||||||||| | |||||||||| ||||| ||| ||||||||| ||||||| ||| |
|
|
| T |
44307312 |
ctaaaaagtcttccagatctagattttttgatcgtcttgccaacaagttaaaaggctactttttttgctctcaaacacctgattaagacgatgtagaagt |
44307213 |
T |
|
| Q |
277 |
---agaagtacccaaagatatg-aagcctttgtgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctctt |
372 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| | || |
|
|
| T |
44307212 |
agaagaagtagccaaagatatgcaagcctttgtgttgaaaaaaagacgtgaactcattgaaattgtatcagaggttgatgataaactttctgaagatttt |
44307113 |
T |
|
| Q |
373 |
catggtggcagccaaattccagagtcttatcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcat |
458 |
Q |
| |
|
|||||||||||||||||| |||||||| ||| |||||||||||||| |||||||| |||||| ||||||||||||||||| |||| |
|
|
| T |
44307112 |
catggtggcagccaaatttcagagtctgttctcgatgatgcaattcgtagggcaaccatagcacggaaatttgtaccaattttcat |
44307027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 80 - 458
Target Start/End: Complemental strand, 43896967 - 43896573
Alignment:
| Q |
80 |
gatcaagtaaaatctaagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaa |
179 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||| |||| | | |||||||||||| |||||||||| | | |
|
|
| T |
43896967 |
gatcaagtaatatctaagcttaatcatcgttgtgctgcaattcaagttccaatatactttgacaattggtgttttggatttgttgttcttgtcaagatga |
43896868 |
T |
|
| Q |
180 |
aggcctacttttttagc---------tcttgtggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgattatgacga |
270 |
Q |
| |
|
||||||||| |||| || | | | ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| ||||| | | |
|
|
| T |
43896867 |
aggcctactattttcgccttaaaatgtttgttagactttttgatcttgtcaacaagttaaaggcctacttttttcgctctgaaacaccttattataagca |
43896768 |
T |
|
| Q |
271 |
tgca------agagaagtacccaaagatatg-aagcctttgtgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttct |
363 |
Q |
| |
|
|| | || |||||||| |||||||| |||||||||||||| || ||||||||||||||| || |||||||||||||||||| ||||| |
|
|
| T |
43896767 |
tgtagaagtaagtgaagtacctgaagatatgcaagcctttgtgttgaagaaaagaagcgaactcattgaaatcgtctcagaggttgatgataaactttct |
43896668 |
T |
|
| Q |
364 |
gaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcat |
458 |
Q |
| |
|
|||||| |||| ||||||||||||||| |||| ||| ||| |||||||||||||| |||||||||||| ||| |||||||||||||||| |||| |
|
|
| T |
43896667 |
gaagcttttcacggtggcagccaaatttcagaatctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattttcat |
43896573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 225 - 453
Target Start/End: Complemental strand, 44302165 - 44301930
Alignment:
| Q |
225 |
agttaaaggcctacttttttcgctctgaaatacctgattatgacgatgcaa------gagaagtacccaaagatatg-aagcctttgtgttgnnnnnnng |
317 |
Q |
| |
|
|||||||||||||||||||||||| ||||| |||||||||| |||||| | |||||||||||||||||||| |||||||||||||| | |
|
|
| T |
44302165 |
agttaaaggcctacttttttcgctttgaaaaacctgattataacgatgtagaagtaggagaagtacccaaagatatgcaagcctttgtgttgaagaaaag |
44302066 |
T |
|
| Q |
318 |
acacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggcagccaaattccagagtcttatcttgatgatgcaatt |
417 |
Q |
| |
|
|| ||||||||||||||||||||| ||||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||| |||||||||||| |
|
|
| T |
44302065 |
acgcgaactcattgaaattgtatcggaggttgatgataaactttctgaagcttttcatggtggaagccaaattctagagtcttatctcgatgatgcaatt |
44301966 |
T |
|
| Q |
418 |
cggagggcaactatagcaaggaaatttgtaccaatt |
453 |
Q |
| |
|
|| ||||||| |||||||||||||||||||||||| |
|
|
| T |
44301965 |
cgtggggcaaccatagcaaggaaatttgtaccaatt |
44301930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 90 - 193
Target Start/End: Complemental strand, 44302249 - 44302146
Alignment:
| Q |
90 |
aatctaagcttaatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactt |
189 |
Q |
| |
|
|||||| ||||||||||| ||||||||||||||||||||||||| |||| |||||| |||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
44302249 |
aatctacgcttaatcatcattgtgctgcaattcaagttccaatacacattcacgattcttatattggatttgttgatcttgtcgagttaaaggcctactt |
44302150 |
T |
|
| Q |
190 |
tttt |
193 |
Q |
| |
|
|||| |
|
|
| T |
44302149 |
tttt |
44302146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43897055 - 43897019
Alignment:
| Q |
1 |
aatgacaagatttcaacttccaaggcttatatttatc |
37 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||| |
|
|
| T |
43897055 |
aatgacaagatttcaatttccaaggcttatatttatc |
43897019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 44302289 - 44302256
Alignment:
| Q |
1 |
aatgacaagatttcaacttccaaggcttatattt |
34 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||| |
|
|
| T |
44302289 |
aatgacaagatttcaatttccaaggcttatattt |
44302256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 1 - 507
Target Start/End: Complemental strand, 18702639 - 18702123
Alignment:
| Q |
1 |
aatgacaagatttcaacttccaaggcttatatttatccacgatcttgatcagggaggagcagatccatggaacgttgtagatcaagtaaaatctaagctt |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||| |||||| ||||||||||| ||||||| |||||||||||||||||||||||||| |
|
|
| T |
18702639 |
aatgacaagatttcaacttcctaggcttatatttattgacgatctgtatcaggaaggagcagatctatggaacattgtagatcaagtaaaatctaagctt |
18702540 |
T |
|
| Q |
101 |
aatcatcgttgtgctgcaattcaagttccaatatgcattgacgattgttatgttggatttgttgatcttgtcaagttaaaggcctactttt------tta |
194 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | || |||||| |||| |||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
18702539 |
aatcatcgttgtgctgcaattcaagttccaatacactttaacgattattatattggatttgttgatcttgtcaagttagaggcctactttttccccctta |
18702440 |
T |
|
| Q |
195 |
---gctcttgtggactttttgatcttgccaacaagttaaaggcctacttttttcgctctgaaatacctgatt---------atgacgatgcaagagaagt |
282 |
Q |
| |
|
|| | | ||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||| || | | ||||| | |
|
|
| T |
18702439 |
aattctttgctagactttttgat---------aagttaaaggcctacttttttcgctctgaaacacctgattataattatgatgtagaagtaggagaaat |
18702349 |
T |
|
| Q |
283 |
acccaaagatatg-aagcctttgtgttgnnnnnnngacacgaactcattgaaattgtatcagaggttgatgataaaatttctgaagctcttcatggtggc |
381 |
Q |
| |
|
|||| |||||||| |||||||||||||| ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||| ||||||||||| |
|
|
| T |
18702348 |
acccgaagatatgcaagcctttgtgttgaagaaaagacgcgaactcattgaaattgtgtcagaggttgatgataaactttctaaagcttttcatggtggc |
18702249 |
T |
|
| Q |
382 |
agccaaattccagagtcttatcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcatcagtgatgagagatataagggga |
481 |
Q |
| |
|
||| |||||||||||||| ||| |||||||||||||| |||||||||||| ||| ||||||||||||||||||||| |||||||||| ||| || | |
|
|
| T |
18702248 |
agcaaaattccagagtctgttctcgatgatgcaattcgtagggcaactatatcaatgaaatttgtaccaattatcattggtgatgagagctatgagacgt |
18702149 |
T |
|
| Q |
482 |
tagaagtatttatggagggtgtaatt |
507 |
Q |
| |
|
|| || |||| ||||||||||||||| |
|
|
| T |
18702148 |
taaaactattaatggagggtgtaatt |
18702123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 401 - 458
Target Start/End: Original strand, 35856474 - 35856531
Alignment:
| Q |
401 |
atcttgatgatgcaattcggagggcaactatagcaaggaaatttgtaccaattatcat |
458 |
Q |
| |
|
||||||||| | ||||||| ||||| || |||||||||||||||||||||||| |||| |
|
|
| T |
35856474 |
atcttgatggtacaattcgtagggctacaatagcaaggaaatttgtaccaattttcat |
35856531 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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