View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17701_high_3 (Length: 440)
Name: NF17701_high_3
Description: NF17701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17701_high_3 |
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Alignment Details
Target: chr7 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 2 - 429
Target Start/End: Original strand, 10194107 - 10194538
Alignment:
| Q |
2 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaactgcatcgcatcaattgcattcactgcaacatggaacttatc |
101 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
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| T |
10194107 |
atgtgttctataaccttataccagtagtacataatctggtattgcaatttgtcataaact-----gaatcaattgcattcactgcaacatggaacttatc |
10194201 |
T |
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| Q |
102 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgccgcctaacagtgtttgatc |
201 |
Q |
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| T |
10194202 |
aaaattttctgtccctaacaccattccaggcatcctgatatcaggatcaaggaattcgaactcatctgttactgaacatgcagcctaacagtgtttgatc |
10194301 |
T |
|
| Q |
202 |
ataaatcgcaaattataattgaca---------agaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
292 |
Q |
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| T |
10194302 |
ataaatcgcaaattataattgacaagaaaaaccagaaaaccctaaaccgtataagtagtgatcggatcttttgcacttcgcttgtctttcatcatattta |
10194401 |
T |
|
| Q |
293 |
tctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtt |
392 |
Q |
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| T |
10194402 |
tctttaaatgcgttacttattcaaaatagaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgtt |
10194501 |
T |
|
| Q |
393 |
taaatccactaaagctaatcagcaaaatcacaggttc |
429 |
Q |
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| T |
10194502 |
taaatccactaaagctaatcagcaaaatcacaggttc |
10194538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 104; Significance: 1e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 294 - 429
Target Start/End: Complemental strand, 19459304 - 19459169
Alignment:
| Q |
294 |
ctttaaatgcgttacttattcaaaatcgaatgctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaacaccgttt |
393 |
Q |
| |
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|||| |||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||| |
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| T |
19459304 |
ctttgaatgcgttacttgttcaaaatcaaactctttgtttccaaaactcaagccagcacagctcatctcaatacaatagcttttgattaaaatacggttt |
19459205 |
T |
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| Q |
394 |
aaatccactaaagctaatcagcaaaatcacaggttc |
429 |
Q |
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||||||||| |||||||||||||||||||||||||| |
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| T |
19459204 |
aaatccactgaagctaatcagcaaaatcacaggttc |
19459169 |
T |
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