View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17701_high_4 (Length: 422)
Name: NF17701_high_4
Description: NF17701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17701_high_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 103 - 422
Target Start/End: Original strand, 34899335 - 34899655
Alignment:
| Q |
103 |
atcagaagagtcttgctcaattttaaaaatcagggctatacaattcatcaatgaannnnnnnncccttttgttttgacacttctctaattgtttcttgtg |
202 |
Q |
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| T |
34899335 |
atcagaagagtcttgctcaattctaaaaatcagggctatacaattcatcaatgaattttttttcccttttgttttgacacttctctaattgtttcttgtg |
34899434 |
T |
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| Q |
203 |
gtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacnnnnnnnntctatgaaga |
302 |
Q |
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| T |
34899435 |
gtgctatttggatccttcttaaactcaacttgtatttattgggatctctttttcgtttaatataatttttgacttcttcaacaaaaaaaatctatgaaga |
34899534 |
T |
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| Q |
303 |
agtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaa-tgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaac |
401 |
Q |
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| T |
34899535 |
agtgtctgctaagacttacaaataattagttggtagctgaatgcagaaaattgaatatcgaaaatgtgtctctaaaaatgttcttagttattaggagaac |
34899634 |
T |
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| Q |
402 |
ctcaattagtgggtcagttga |
422 |
Q |
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| T |
34899635 |
ctcaactagtgggtcagttga |
34899655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 4 - 62
Target Start/End: Original strand, 34899236 - 34899294
Alignment:
| Q |
4 |
tcaacataagtttacagatacgtttattttaaccttgtaaaaaactagttattatagta |
62 |
Q |
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| T |
34899236 |
tcaacataagtttacagatacgtttattttaacctcgtaaaaaactggttattatagta |
34899294 |
T |
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