View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17701_high_5 (Length: 375)

Name: NF17701_high_5
Description: NF17701
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17701_high_5
NF17701_high_5
[»] chr2 (6 HSPs)
chr2 (15-375)||(40056163-40056527)
chr2 (141-230)||(38356837-38356926)
chr2 (141-225)||(35063612-35063696)
chr2 (114-242)||(1299954-1300080)
chr2 (141-206)||(29453643-29453708)
chr2 (121-203)||(45513049-45513131)
[»] chr4 (7 HSPs)
chr4 (36-174)||(39484928-39485067)
chr4 (85-230)||(12007454-12007599)
chr4 (114-225)||(32641905-32642015)
chr4 (136-191)||(50072020-50072075)
chr4 (144-230)||(12007919-12008005)
chr4 (129-230)||(32641168-32641269)
chr4 (162-215)||(2486972-2487025)
[»] scaffold0119 (1 HSPs)
scaffold0119 (91-242)||(36-185)
[»] chr6 (2 HSPs)
chr6 (91-242)||(26670609-26670758)
chr6 (141-202)||(12029351-12029412)
[»] chr8 (5 HSPs)
chr8 (127-230)||(41456052-41456155)
chr8 (136-205)||(13231843-13231912)
chr8 (125-205)||(2623232-2623312)
chr8 (141-191)||(35595-35645)
chr8 (141-225)||(7043101-7043185)
[»] chr1 (5 HSPs)
chr1 (144-225)||(28651687-28651768)
chr1 (116-190)||(48621163-48621237)
chr1 (113-230)||(27818728-27818844)
chr1 (141-225)||(25476083-25476167)
chr1 (114-191)||(48621841-48621918)
[»] chr5 (4 HSPs)
chr5 (141-222)||(24153970-24154051)
chr5 (136-191)||(17115739-17115794)
chr5 (114-215)||(31079720-31079821)
chr5 (149-205)||(29108111-29108166)
[»] chr3 (7 HSPs)
chr3 (141-230)||(45004705-45004794)
chr3 (114-206)||(45146663-45146755)
chr3 (136-191)||(50766027-50766082)
chr3 (136-225)||(50823970-50824059)
chr3 (136-225)||(50851801-50851890)
chr3 (146-202)||(35744535-35744591)
chr3 (145-225)||(51489853-51489933)
[»] chr7 (2 HSPs)
chr7 (141-202)||(35263740-35263801)
chr7 (144-225)||(24555973-24556054)


Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 15 - 375
Target Start/End: Complemental strand, 40056527 - 40056163
Alignment:
Q  15 gagaggaagcaaactatacaacaataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagaaaac 113  Q
    ||||||||||||||||  |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  40056527 gagaggaagcaaacta--caacaataatgaagaaccaccgttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagcaaac 40056430  T
Q  114 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40056429 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcattttcataaacctcagcggag 40056330  T
Q  214 gtgcgtgtaattctcccattatctaatagttcaatggcacttacgtgccgttcttcacaccttctctagcgattgagatttgcaccaacgtggtggaacc 313  Q
    ||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40056329 gtgagtgtaattttcccattatctaatagttcaatggcacttacgtgccgttcttcacaccttctctagcgattgagatttgcaccaacgtggtggaacc 40056230  T
Q  314 aagtgagtaattgtgtggtta-----caacaagtggaccacgtagcagaaaaagaaaggatcacata 375  Q
    |||||||||||||||||||||     |||||||||||||||||||||||||||||||||||||||||    
T  40056229 aagtgagtaattgtgtggttagggttcaacaagtggaccacgtagcagaaaaagaaaggatcacata 40056163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 38356926 - 38356837
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaattctccc 230  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||| ||||| | || ||| ||||||| ||||||| |||||||| ||||    
T  38356926 aacttaagggaggttaatgtatgttttaaaactagagggggtgtttgtgtcatattaatagacctcaggggaggtgagtgtaattttccc 38356837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 35063696 - 35063612
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    ||||||||||||||| ||||||||||| |||||||| || |||| |||| | |||| ||||||||||  ||||||| ||||||||    
T  35063696 aacttaagggaggttcatgtaagttttaaaactagagggagtgtcagtgacattttaataaacctcaagggaggtgagtgtaatt 35063612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 242
Target Start/End: Complemental strand, 1300080 - 1299954
Alignment:
Q  114 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 213  Q
    |||||| ||| |||||||||  || ||||| | || |||||||  || |||||||||||||||||||||||  ||||| |||| |||||| |||  ||||    
T  1300080 aagggaggtgtttgtctatttcattagaacattagagaggttagcgttagttttgaaactagaaggggtgt--gtgtcattttaataaacttcaaaggag 1299983  T
Q  214 gtgcgtgtaattctcccattatctaatag 242  Q
    ||| |||||||| || ||||| |||||||    
T  1299982 gtgagtgtaattttctcattagctaatag 1299954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 206
Target Start/End: Original strand, 29453643 - 29453708
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctc 206  Q
    ||||||| ||||||||||||||||||  |||||||| | |||||||||||  ||||||||||||||    
T  29453643 aacttaaaggaggttaatgtaagtttcaaaactagaggaggtgttagtgttattttcataaacctc 29453708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 45513049 - 45513131
Alignment:
Q  121 gtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaac 203  Q
    |||||||||||||  || | |||||| ||||||||||||| ||||| ||||||||| |||||||   ||||||||| ||||||    
T  45513049 gtgattgtctatttgattaaaacttacgggaggttaatgttagtttcgaaactagagggggtgtcgatgtcgttttaataaac 45513131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 36 - 174
Target Start/End: Original strand, 39484928 - 39485067
Alignment:
Q  36 caataatgaagaaccac-gttaaatattagtggaaaattctctaaagaaattaacagaaagttaactgtcttagaaaacaagggatgtgattgtctatta 134  Q
    ||||| ||||||||| | ||||||||||| ||||||| |||||||||||| |||||| || ||||| || |||  ||| |||||||||| || | |||||    
T  39484928 caatattgaagaacctccgttaaatattaatggaaaaatctctaaagaaagtaacagtaatttaacagtgttaacaaagaagggatgtgcttatttatta 39485027  T
Q  135 tatgagaacttaagggaggttaatgtaagttttgaaacta 174  Q
     ||||||||||||| ||||||| |||||||||||||||||    
T  39485028 catgagaacttaagcgaggttagtgtaagttttgaaacta 39485067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 85 - 230
Target Start/End: Complemental strand, 12007599 - 12007454
Alignment:
Q  85 ttaacagaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgt 184  Q
    |||||||||||||||  || |||   || |||||| ||| |||| ||||  ||||||||||||| |||||||||||| ||||| |||||||| |||||||    
T  12007599 ttaacagaaagttaatggtgttaatgaaaaagggaggtgtttgtgtatttgatgagaacttaagtgaggttaatgtatgttttaaaactagagggggtgt 12007500  T
Q  185 tagtgtcgttttcataaacctcagcggaggtgcgtgtaattctccc 230  Q
     |||||| ||||  ||||||  || ||||||  |||||||| ||||    
T  12007499 cagtgtcattttagtaaaccataggggaggttggtgtaattttccc 12007454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 114 - 225
Target Start/End: Original strand, 32641905 - 32642015
Alignment:
Q  114 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 213  Q
    ||||| |||| | ||||||| |||||||| ||||||||||||||| |||||||| ||| || |||||| ||||||||| ||| |||| || || | ||||    
T  32641905 aaggggtgtgttagtctattttatgagaatttaagggaggttaatataagttttaaaatta-aaggggggttagtgtcatttacatagacttcgggggag 32642003  T
Q  214 gtgcgtgtaatt 225  Q
    ||| ||||||||    
T  32642004 gtgagtgtaatt 32642015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 136 - 191
Target Start/End: Original strand, 50072020 - 50072075
Alignment:
Q  136 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 191  Q
    ||||||||||||||||||||  |||||||||| |||||| | ||||||||||||||    
T  50072020 atgagaacttaagggaggtttgtgtaagttttaaaactaaagggggtgttagtgtc 50072075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 230
Target Start/End: Original strand, 12007919 - 12008005
Alignment:
Q  144 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaattctccc 230  Q
    ||||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||  |||| || || ||||||| |||||||| ||||    
T  12007919 ttaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaatcttaggggaggtgtgtgtaattttccc 12008005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 129 - 230
Target Start/End: Complemental strand, 32641269 - 32641168
Alignment:
Q  129 ctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaattctc 228  Q
    ||||| ||||||||||||||||| |||| ||||| |||| ||| |||| | ||||| |||||| ||| |||| || ||||  |||||| |||||||| ||    
T  32641269 ctattttatgagaacttaagggatgttagtgtaatttttaaaattagaggaggtgtcagtgtcatttacatagacttcaggagaggtgggtgtaattatc 32641170  T
Q  229 cc 230  Q
    ||    
T  32641169 cc 32641168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 162 - 215
Target Start/End: Original strand, 2486972 - 2487025
Alignment:
Q  162 agttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggt 215  Q
    |||||| |||||||||||||||| ||||||||||| ||| |||| || ||||||    
T  2486972 agttttaaaactagaaggggtgtcagtgtcgttttaatagaccttagtggaggt 2487025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 242
Target Start/End: Original strand, 36 - 185
Alignment:
Q  91 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 190  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  36 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 133  T
Q  191 cgttttcataaacctcagcggaggtgcgtgtaattctcccattatctaatag 242  Q
    | |||| ||||||||||  ||||||| |||||||| || ||||| |||||||    
T  134 cattttaataaacctcaagggaggtgagtgtaattttctcattagctaatag 185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 91 - 242
Target Start/End: Complemental strand, 26670758 - 26670609
Alignment:
Q  91 gaaagttaactgtcttagaaaacaagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 190  Q
    |||||||||| || |||  ||| |||||| ||| |||||||||  || ||||| | ||||||||||  || |||||||||||||||||||||||  ||||    
T  26670758 gaaagttaacggtgttaataaagaagggaggtgtttgtctatttcattagaacattagggaggttaccgttagttttgaaactagaaggggtgt--gtgt 26670661  T
Q  191 cgttttcataaacctcagcggaggtgcgtgtaattctcccattatctaatag 242  Q
    | |||| ||||||||||  ||||||| |||||||| || ||||| |||||||    
T  26670660 cattttaataaacctcaagggaggtgagtgtaattttctcattagctaatag 26670609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 12029412 - 12029351
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 202  Q
    ||||||||||| ||||||||   |||||||||||||  ||||||||||||| |||| |||||    
T  12029412 aacttaagggatgttaatgttcattttgaaactagagagggtgttagtgtcattttaataaa 12029351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 230
Target Start/End: Original strand, 41456052 - 41456155
Alignment:
Q  127 gtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaattc 226  Q
    ||||||| || ||||||||||||||||||| |||||||||  ||| |||| | | ||| |||||| |||||||| ||||||| ||||||| ||||||||     
T  41456052 gtctattttacgagaacttaagggaggttagtgtaagtttaaaaattagaggagatgtcagtgtcattttcatagacctcaggggaggtgagtgtaatta 41456151  T
Q  227 tccc 230  Q
    ||||    
T  41456152 tccc 41456155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 136 - 205
Target Start/End: Original strand, 13231843 - 13231912
Alignment:
Q  136 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 205  Q
    ||||||||| ||||||||||| |||||||||| ||| |||| ||||||| |||||| ||||  |||||||    
T  13231843 atgagaactaaagggaggttagtgtaagttttaaaattagagggggtgtcagtgtcattttagtaaacct 13231912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 125 - 205
Target Start/End: Original strand, 2623232 - 2623312
Alignment:
Q  125 ttgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 205  Q
    |||||||||  |||| |||| ||||||||||| |||||||||| ||| |||| ||| ||| |||||| |||| ||||||||    
T  2623232 ttgtctatttgatgaaaactcaagggaggttagtgtaagttttaaaattagatgggatgtcagtgtcattttaataaacct 2623312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 191
Target Start/End: Complemental strand, 35645 - 35595
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 191  Q
    ||||||||| ||||||||||||||||| |||||| || ||||||| |||||    
T  35645 aacttaaggaaggttaatgtaagttttaaaactaaaaagggtgtttgtgtc 35595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 141 - 225
Target Start/End: Complemental strand, 7043185 - 7043101
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    |||||||||||||||||| |   |||| |||||||| | |||||||||| | |||| |||||||| || ||||||| ||| ||||    
T  7043185 aacttaagggaggttaatattcattttaaaactagaggtggtgttagtgccattttaataaaccttaggggaggtgagtgcaatt 7043101  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 144 - 225
Target Start/End: Complemental strand, 28651768 - 28651687
Alignment:
Q  144 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    |||||||||||||||||||||||| ||| |||| ||||||| |||||| |||| ||| ||||||| |||||||  |||||||    
T  28651768 ttaagggaggttaatgtaagttttaaaaatagagggggtgtcagtgtcattttaatagacctcaggggaggtgattgtaatt 28651687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 116 - 190
Target Start/End: Complemental strand, 48621237 - 48621163
Alignment:
Q  116 gggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgt 190  Q
    |||||||| |||||||||| |||| |||||||||||| |||||||||  ||| |||||||| ||||||| |||||    
T  48621237 gggatgtgtttgtctattacatgataacttaagggagattaatgtaaaatttaaaactagagggggtgtcagtgt 48621163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 113 - 230
Target Start/End: Complemental strand, 27818844 - 27818728
Alignment:
Q  113 caagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcgga 212  Q
    ||||||| |||  ||||||||| | || || |||||||| || |||||| ||||| ||||||||  ||||||||||||| |||||||||| | ||| |||    
T  27818844 caagggaggtgtctgtctattaaaggaaaatttaagggatgtaaatgtatgttttaaaactagagagggtgttagtgtcattttcataaatc-cagggga 27818746  T
Q  213 ggtgcgtgtaattctccc 230  Q
    |||| |||||||| ||||    
T  27818745 ggtgagtgtaattttccc 27818728  T

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Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 141 - 225
Target Start/End: Original strand, 25476083 - 25476167
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    ||||| |||||||||  |||||||||| |||||||| || |||| |||||| |||| ||||||||||| |||||||  |||||||    
T  25476083 aacttgagggaggttcgtgtaagttttaaaactagagggagtgtcagtgtcattttaataaacctcaggggaggtgaatgtaatt 25476167  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 191
Target Start/End: Original strand, 48621841 - 48621918
Alignment:
Q  114 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 191  Q
    |||||| |||||||| ||||| |  | |||||||||||||||| |||| ||||| |||||| | |||||||| |||||    
T  48621841 aagggaggtgattgtgtattacaaaaaaacttaagggaggttagtgtatgtttttaaactaaagggggtgttggtgtc 48621918  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 222
Target Start/End: Original strand, 24153970 - 24154051
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgta 222  Q
    |||||||||||||||||||| |||||| |||||||| ||||| | | |||| |||| |||||||| || ||||||| |||||    
T  24153970 aacttaagggaggttaatgttagttttaaaactagagggggtctaactgtcattttaataaaccttaggggaggtgagtgta 24154051  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 17115794 - 17115739
Alignment:
Q  136 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 191  Q
    ||||||||||||||||||||  |||||||||| ||||||||   ||||||||||||    
T  17115794 atgagaacttaagggaggttggtgtaagttttaaaactagagttggtgttagtgtc 17115739  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 215
Target Start/End: Original strand, 31079720 - 31079821
Alignment:
Q  114 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggag 213  Q
    |||||||||| |||||||||   ||| ||| ||||||||||||||||   |||| ||||||||   |||||||||| | |||| |||||||| || ||||    
T  31079720 aagggatgtgtttgtctatttgctgaaaacctaagggaggttaatgttcattttaaaactagagaaggtgttagtgccattttaataaaccttaggggag 31079819  T
Q  214 gt 215  Q
    ||    
T  31079820 gt 31079821  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 149 - 205
Target Start/End: Complemental strand, 29108166 - 29108111
Alignment:
Q  149 ggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacct 205  Q
    |||||||| |||||||||| |||||||| |||||||||||||| ||||  |||||||    
T  29108166 ggaggttagtgtaagttttaaaactaga-ggggtgttagtgtcatttttgtaaacct 29108111  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 141 - 230
Target Start/End: Complemental strand, 45004794 - 45004705
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaattctccc 230  Q
    ||||||||||||||| ||||||| ||| |||||| | ||||||| | || | |||| ||||||||||| ||||||| |||||||| ||||    
T  45004794 aacttaagggaggttcatgtaagatttaaaactaaagggggtgtcattgacattttaataaacctcagaggaggtgagtgtaattttccc 45004705  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 114 - 206
Target Start/End: Original strand, 45146663 - 45146755
Alignment:
Q  114 aagggatgtgattgtctattatatgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctc 206  Q
    |||||| ||| |||||||||  || ||||| |||||||||||| ||| |||||| ||| |||||||| |||| ||||| |||| |||||||||    
T  45146663 aagggaggtgtttgtctatttcattagaacataagggaggttagtgttagttttaaaattagaagggatgtttgtgtcattttaataaacctc 45146755  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 50766082 - 50766027
Alignment:
Q  136 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtc 191  Q
    |||| |||||||||||| ||| |||| ||||| |||||||| ||||||||||||||    
T  50766082 atgaaaacttaagggagattagtgtaggttttcaaactagagggggtgttagtgtc 50766027  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Complemental strand, 50824059 - 50823970
Alignment:
Q  136 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||  |||||||    
T  50824059 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaatt 50823970  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 225
Target Start/End: Original strand, 50851801 - 50851890
Alignment:
Q  136 atgagaacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    |||| ||||||| |||||||| |||| ||||| ||||||||  ||||||||||||| |||  ||||| ||||  |||||||  |||||||    
T  50851801 atgaaaacttaaaggaggttagtgtaggttttcaaactagagagggtgttagtgtcatttagataaaactcaagggaggtggatgtaatt 50851890  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 202
Target Start/End: Original strand, 35744535 - 35744591
Alignment:
Q  146 aagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 202  Q
    ||||||||||||||| |||||||||| |||| ||| ||| | ||||||||| |||||    
T  35744535 aagggaggttaatgttagttttgaaattagaggggatgtcattgtcgttttaataaa 35744591  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 51489853 - 51489933
Alignment:
Q  145 taagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    |||||||||||||| |   |||| |||||||| |||||||||||| | |||| |||||||| || ||||||| ||| ||||    
T  51489853 taagggaggttaatattcattttaaaactagagggggtgttagtgccattttaataaaccttaggggaggtgagtgcaatt 51489933  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 141 - 202
Target Start/End: Complemental strand, 35263801 - 35263740
Alignment:
Q  141 aacttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaa 202  Q
    ||||||||||||||||||||||||||  ||| ||||| || ||||| |||| ||||||||||    
T  35263801 aacttaagggaggttaatgtaagtttcaaaattagaaaggatgttaatgtcattttcataaa 35263740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 144 - 225
Target Start/End: Original strand, 24555973 - 24556054
Alignment:
Q  144 ttaagggaggttaatgtaagttttgaaactagaaggggtgttagtgtcgttttcataaacctcagcggaggtgcgtgtaatt 225  Q
    |||||||||||||||||   || | |||||||| |||||||| |||||||||  | ||||||||| ||||||  ||||||||    
T  24555973 ttaagggaggttaatgtctattattaaactagagggggtgtttgtgtcgtttgaacaaacctcaggggaggttagtgtaatt 24556054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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