View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17702_high_1 (Length: 808)
Name: NF17702_high_1
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 7 - 86
Target Start/End: Complemental strand, 50247788 - 50247709
Alignment:
| Q |
7 |
aggagaagcataggtaatgtttgtcggcctcaagtcaataaagtataatgtctattgactatataaaacatccttcacac |
86 |
Q |
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| T |
50247788 |
aggagaagcataagtaatgtttgtcggcctcaagtcaataaagtataatgtctagtgactatataaaacatcctacacac |
50247709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 36 - 72
Target Start/End: Original strand, 50247637 - 50247673
Alignment:
| Q |
36 |
tcaagtcaataaagtataatgtctattgactatataa |
72 |
Q |
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| T |
50247637 |
tcaagtcaataaagtataatgtctagtgactatataa |
50247673 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 332 - 468
Target Start/End: Complemental strand, 46885182 - 46885043
Alignment:
| Q |
332 |
ttctctcatcaatt-tgacaccaaaactgcacgacatataccatttgaaaatttaaatttcatagaataataaatgaaatggttgaaatcaaaca--tta |
428 |
Q |
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| T |
46885182 |
ttctcttatcaattgtgacaccaaaactacatgacacatgccatttgaaaatttattttttataggatactaaatgaaattgttcaaatcacacaattgc |
46885083 |
T |
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| Q |
429 |
aacttttcagaaactttcatggtatatattaccatgggta |
468 |
Q |
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| T |
46885082 |
aacttctcaaaaactttcatgggatatgatacaatgggta |
46885043 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 346 - 421
Target Start/End: Original strand, 37685167 - 37685242
Alignment:
| Q |
346 |
tgacaccaaaactgcacgacatataccatttgaaaatttaaatttcatagaataataaatgaaatggttgaaatca |
421 |
Q |
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| T |
37685167 |
tgacaccaaaacagcatgacacatgccatttgaaaatttaatttttatataatactaaatgaacttgttgaaatca |
37685242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 161 - 211
Target Start/End: Complemental strand, 46885336 - 46885285
Alignment:
| Q |
161 |
attcatttaatcatgttctaatcaacca-aaaataacacccatacttatttg |
211 |
Q |
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| T |
46885336 |
attcatttaatcatgttataatcaaccaaaaaataatacccatacttatttg |
46885285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 332 - 463
Target Start/End: Complemental strand, 7498609 - 7498475
Alignment:
| Q |
332 |
ttctctcatcaatt-tgacaccaaaactgcacgacatataccatttgaaaatttaaatttcatagaataataaatgaaatggttgaaatcaaaca--tta |
428 |
Q |
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| T |
7498609 |
ttctcttatcaattgtgacaccaaaacagcatgacacatgccatttgaaaatttaatttttatatgatactaaatgaacttgttgaaatcacacaattgc |
7498510 |
T |
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| Q |
429 |
aacttttcagaaactttcatggtatatattaccat |
463 |
Q |
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| T |
7498509 |
aacttttcacaatcttttatgggatataataccat |
7498475 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 224
Target Start/End: Original strand, 21546021 - 21546088
Alignment:
| Q |
158 |
aatattcatttaatcatgttctaatcaacc-aaaaataacacccatacttatttgtggctgcttctcc |
224 |
Q |
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| T |
21546021 |
aatattcatttaatcatgttataatcaaccaaaaaatagtactcatacatatttgtggctacttctcc |
21546088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 37 - 109
Target Start/End: Complemental strand, 7498763 - 7498691
Alignment:
| Q |
37 |
caagtcaataaagtataatgtctattgactatataaaacatccttcacacgaagcaaaattaaaataagcctc |
109 |
Q |
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| T |
7498763 |
caagtcaataaagcataaggtctattggctttataaaacatcctacacacatagtaaaatctaaataagcctc |
7498691 |
T |
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