View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17702_low_10 (Length: 240)
Name: NF17702_low_10
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 6 - 210
Target Start/End: Complemental strand, 26420999 - 26420795
Alignment:
| Q |
6 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattttagttgctttgcattttagtgtaaattttaatctgttttggttatagacgagttat |
105 |
Q |
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| T |
26420999 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattttagttgctttgcattttagtgtaaattttaatatgttttggttatagacgagttat |
26420900 |
T |
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| Q |
106 |
aaattgatgtgtagaatgtacatttaattaacaaaatggatttgagcttataatagcatatagtataatttatgggttagtcaatgtgttcataactttg |
205 |
Q |
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| T |
26420899 |
aaattgatgtgtcgaatgtacatttaattaacaaaatggatttgagcttataatagcatatagtataatttatgggttagtcaatgtgttcataactttg |
26420800 |
T |
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| Q |
206 |
tagtg |
210 |
Q |
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||||| |
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| T |
26420799 |
tagtg |
26420795 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 199 - 240
Target Start/End: Complemental strand, 26418674 - 26418633
Alignment:
| Q |
199 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgt |
240 |
Q |
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| T |
26418674 |
aactttgtagtgcttgctcacactttttgattgaaggtgtgt |
26418633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 27991873 - 27991919
Alignment:
| Q |
31 |
ttcatgtaaacattgattttagttgctttgcattttagtgtaaattt |
77 |
Q |
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| T |
27991873 |
ttcatgtaaacattgattttatttgctttgcatcttagtgtaaattt |
27991919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 28078406 - 28078452
Alignment:
| Q |
31 |
ttcatgtaaacattgattttagttgctttgcattttagtgtaaattt |
77 |
Q |
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| T |
28078406 |
ttcatgtaaacattgattttatttgctttgcatcttagtgtaaattt |
28078452 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 27981460 - 27981536
Alignment:
| Q |
132 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa |
200 |
Q |
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|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |
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| T |
27981460 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataa |
27981536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 28067990 - 28068066
Alignment:
| Q |
132 |
attaacaaaatggatttgagcttataatagcat--------atagtataatttatgggttagtcaatgtgttcataa |
200 |
Q |
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|||||||||||||| ||||||||||||||| || ||||||||||||||||||||||||| |||||||||| |
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| T |
28067990 |
attaacaaaatggacttgagcttataatagtatcctatactatagtataatttatgggttagtcaacgtgttcataa |
28068066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 27981397 - 27981440
Alignment:
| Q |
6 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattt |
49 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |||| |
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| T |
27981397 |
atcaacttactttctaggttcatgcttcatgtaaacattcattt |
27981440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 6 - 49
Target Start/End: Original strand, 28067927 - 28067970
Alignment:
| Q |
6 |
atcaacttgctatctaggttcatgcttcatgtaaacattgattt |
49 |
Q |
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|||||||| || ||||||||||||||||||||||||||| |||| |
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| T |
28067927 |
atcaacttactttctaggttcatgcttcatgtaaacattcattt |
28067970 |
T |
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