View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17702_low_11 (Length: 219)
Name: NF17702_low_11
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_low_11 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 6 - 196
Target Start/End: Original strand, 8016370 - 8016560
Alignment:
| Q |
6 |
tgataagctcaaataagtcgatcaagacaaactaacctcggatgtagcaaacattagatcatgaggtatagcaacttgatcaaagtcaacatcaatgaca |
105 |
Q |
| |
|
|||||| |||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8016370 |
tgataatctcaaataagtcaatcaaaacaaactaacctcggacgtagcaaacattagatcatgaggtatagcaacttgatcaaagtcaacatcaatgaca |
8016469 |
T |
|
| Q |
106 |
cgatcatctttgccacctaattgtaccctcaacacacgaaagtttgttcctccaagatccaatgcataaaacaaccctttctcattcctat |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8016470 |
cgatcatctttgccacctaattgtaccctcaacacacgaaagtttgttcctccaagatccaatgcataaaacaaccctttctcattcctat |
8016560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 139 - 176
Target Start/End: Original strand, 4577008 - 4577045
Alignment:
| Q |
139 |
acacgaaagtttgttcctccaagatccaatgcataaaa |
176 |
Q |
| |
|
||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
4577008 |
acacgaaagttagttcctccaaggtccaatgcataaaa |
4577045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University