View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17702_low_2 (Length: 604)
Name: NF17702_low_2
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 481; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 481; E-Value: 0
Query Start/End: Original strand, 15 - 595
Target Start/End: Complemental strand, 27296262 - 27295697
Alignment:
| Q |
15 |
aaaagtactatggcttgcggtaatatttcaattacggataaattattggacatttcgatttatcgaaacaacagttggtaactagtccatgcagaactcc |
114 |
Q |
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| T |
27296262 |
aaaagtactatggcttgcggtaatatttcaattacggataaattattgcacatttctatttatccaaacaacagttggtat-taggccagg--------- |
27296173 |
T |
|
| Q |
115 |
atgttttgaacttttcttaactgttatgcaggagatgattgtatttccatacaaactggatgctcaaacgtatacgtacacaatgtcgactgtggaccag |
214 |
Q |
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| T |
27296172 |
----tttgaacttttttta-ctattatgcaggagatgattgtatttctatacaaactggatgctcaaatgtatacgtacacaatgtcgactgtggaccag |
27296078 |
T |
|
| Q |
215 |
ggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatgg |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27296077 |
ggcatggaatcagcatcggaggtctaggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatgg |
27295978 |
T |
|
| Q |
315 |
tgtcagaatcaaaacatggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaatc |
414 |
Q |
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| T |
27295977 |
tgtcagaatcaaaacatggcaggtaaaaaagattcctatatgttcatcaagcttatcagaaaatttaacttcaaaatcatttcataccgataattgaatc |
27295878 |
T |
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| Q |
415 |
ttctctcaaagccaaataattatgattcaatcaaatgctgcaaagctctcattcaatccaaataccttcatcaaattgaatgaaaaatttgatctctaac |
514 |
Q |
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| T |
27295877 |
ttctctcaaagccaaataattatgattcaatcaaatgctgcaaagctctcattcaatccaaataccttcatcaaattgaatgaaaaatttgatctctaac |
27295778 |
T |
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| Q |
515 |
aaattaaataaaaaattatgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttcacaggttc |
595 |
Q |
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| T |
27295777 |
aaattaaataaaaaattatgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttcacaggttc |
27295697 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 119; Significance: 2e-60; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 119; E-Value: 2e-60
Query Start/End: Original strand, 139 - 341
Target Start/End: Original strand, 14738520 - 14738722
Alignment:
| Q |
139 |
tatgcaggagatgattgtatttccatacaaactggatgctcaaacgtatacgtacacaatgtcgactgtggaccagggcatggaatcagcatcggaggtc |
238 |
Q |
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| T |
14738520 |
tatgcaggagatgattgcatttctatacaaactggatgctcaaatgtatatgtacacaatgtcaactgtggtccgggacatggaatcagcattggaagtt |
14738619 |
T |
|
| Q |
239 |
taggaaaggataatactagagcctgtgtctcaaacatcactgtcagggatgtcaacatgcataacacaatgaatggtgtcagaatcaaaacatggcaggt |
338 |
Q |
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| T |
14738620 |
taggaaaagataacaccagagcctgtgtctcaaacattactgtcagagatgtcaacatacacgactcaatgaatggtgttagaatcaaaacatggcaggt |
14738719 |
T |
|
| Q |
339 |
aaa |
341 |
Q |
| |
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||| |
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| T |
14738720 |
aaa |
14738722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 533 - 588
Target Start/End: Original strand, 14739019 - 14739074
Alignment:
| Q |
533 |
tgcagggtggatcaggttcagtacaaggagtactattctcaaacatacaagtttca |
588 |
Q |
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| T |
14739019 |
tgcagggtggatctggttcagtacagggagtattattctcaaacatacaagtttca |
14739074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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