View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17702_low_3 (Length: 441)
Name: NF17702_low_3
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_low_3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 15 - 441
Target Start/End: Complemental strand, 13409671 - 13409237
Alignment:
| Q |
15 |
cacagacacggacacaagagataataatgtatacgaacacgtcaatttcgataataatttgaaaaaatgaattaatagaacttagttacacgtgttggtg |
114 |
Q |
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| T |
13409671 |
cacagacacggacacaagagataataata-atagtaacacatcaatatcgataataatttgaaaaaataaattaatagaacttagttacacgtgttggtg |
13409573 |
T |
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| Q |
115 |
ttgtgactcagaggcaaacacgagacatacttttgattagaagtgtcggtgctaacgacggtctaatggttatgcatggaggactatgatcttgcaacat |
214 |
Q |
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| T |
13409572 |
ttg--actcagaggcaaacacaagacatacttttgattagaagtgtcggtgcttacgacggtctaatggttatgcatggaggactatgatcttgcaacat |
13409475 |
T |
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| Q |
215 |
tat---tgtattatgagtagcttaataaaaaagac--aagtaaaattcaaa------atgattattaaattgtatgttgagtttaatatagaacaattga |
303 |
Q |
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| T |
13409474 |
tattcatgtattatgagtagcttaataaaaaagacaaaagtaaaattcaaaataattattattattaaattgtatgttgagtttaatatagaacaattga |
13409375 |
T |
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| Q |
304 |
tttagtttgttttgatttagttagtatggaaagataaggtattgaattatgacaaaatgtttagattgaagnnnnnnnntgtgaaaaatgaagtatgttt |
403 |
Q |
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| T |
13409374 |
tttagtttgttttgatttagttagtatggaaagataaggtattgaattatgacaaaatgtttagattgaagaaaaaaaatgtgaaaaatgaagtatgttt |
13409275 |
T |
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| Q |
404 |
tatgcatgcagtataatatggaaatgatatgcacctgc |
441 |
Q |
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| T |
13409274 |
tatgcatgcagtataacattgaaatgatatgcacctgc |
13409237 |
T |
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