View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17702_low_4 (Length: 432)
Name: NF17702_low_4
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 145; Significance: 4e-76; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 272 - 416
Target Start/End: Original strand, 43194670 - 43194814
Alignment:
| Q |
272 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctca |
371 |
Q |
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| T |
43194670 |
gcttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacaccacttctcctaacatgaacctca |
43194769 |
T |
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| Q |
372 |
tccttctctttcaaagatccaccatgtaactcttggcgtttcttt |
416 |
Q |
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| T |
43194770 |
tccttctctttcaaagatccaccatgtaactcttggcgtttcttt |
43194814 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 59 - 188
Target Start/End: Original strand, 43194461 - 43194590
Alignment:
| Q |
59 |
ttaatttaataaaatcaaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattc |
158 |
Q |
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| T |
43194461 |
ttaatttaataaaatcaaatatttaacacatatcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattc |
43194560 |
T |
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| Q |
159 |
aatctcacaactaaaacacaatgtcactcc |
188 |
Q |
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| T |
43194561 |
aatctcacaactaaaacacaatgtcactcc |
43194590 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 75 - 165
Target Start/End: Original strand, 43194305 - 43194395
Alignment:
| Q |
75 |
aaatatttaacacacttcaagtcaagattgaatcgttcagataacctaaccaaaacaaactcgattaggtcatcagaacgattcaatctca |
165 |
Q |
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| T |
43194305 |
aaatatttaacacatttcaagttaagattgaaccgttcaggtaacctaaccaaaacaaactaagttaagtcacctgaacgattcaatctca |
43194395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 7 - 43
Target Start/End: Original strand, 43194408 - 43194444
Alignment:
| Q |
7 |
acatcatcatcaacaacaataacaactttcaatcaca |
43 |
Q |
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| T |
43194408 |
acatcatcatcaacaacaataacaactttcaatcaca |
43194444 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 343
Target Start/End: Complemental strand, 43193844 - 43193777
Alignment:
| Q |
276 |
acagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaag |
343 |
Q |
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||||||||||||||||||||||||| | || || ||||||||||| || ||||| ||||||||||| |
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| T |
43193844 |
acagtaacaggtctctcaggcaactggatgcagaaggaacagttaaggctaccatcgaagatatcaag |
43193777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 350
Target Start/End: Complemental strand, 19105426 - 19105349
Alignment:
| Q |
273 |
cttacagtaacaggtctctcaggcaacttcacacaaaacgaacagttaagactcccatcaaagatatcaagaacacca |
350 |
Q |
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|||||||||| ||||||||||| |||| | |||||| ||||| |||||||| |||||||| | |||||| |||||| |
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| T |
19105426 |
cttacagtaatgggtctctcaggtaactgtatacaaaaagaacaattaagactaccatcaaacacatcaagcacacca |
19105349 |
T |
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