View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17702_low_7 (Length: 300)
Name: NF17702_low_7
Description: NF17702
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17702_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 6 - 284
Target Start/End: Original strand, 28486230 - 28486507
Alignment:
| Q |
6 |
agaagcataggatcaaggtgtgagtgtgagtgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttcaggagattttgcattt |
105 |
Q |
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| T |
28486230 |
agaatcattggatcaaggtgtgagtgtgagtgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttcaggagattttgcattt |
28486329 |
T |
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| Q |
106 |
ggattttaccaacttcctgatgatcttttcatgctagctatatggtatgagaagatacaagatgatgccatcatttggtatgcaaatggagacaaccctg |
205 |
Q |
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| T |
28486330 |
ggattttaccaacttcctgatgatcttttcttgctagctatatggtatgacaagatacaagatgataccatcatttggtatgcaaatggaaacaaacctg |
28486429 |
T |
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| Q |
206 |
ctcctaagggatcaagattggtattaaatgattctcgtggtttggttctcaccaaccctcaaggtttagagttatggag |
284 |
Q |
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| T |
28486430 |
ct-ctaagggatcaagattggtattaaatgattctcgtggtttggttctcaccaaccctcaaggtttacagttatggag |
28486507 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 15 - 284
Target Start/End: Original strand, 28464465 - 28464734
Alignment:
| Q |
15 |
ggatcaaggtgtgagtgtgagtgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttcaggagattttgcatttggattttac |
114 |
Q |
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| T |
28464465 |
ggatcaaggggtgagtgtcagtgttggtgagtcacttacagctggcaatgggacaacccgatggctctctccttcaagagattttgcatttgggttttac |
28464564 |
T |
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| Q |
115 |
caacttcctgatgatcttttcatgctagctatatggtatgagaagatacaagatgatgccatcatttggtatgcaaatggagacaaccctgctcctaagg |
214 |
Q |
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| T |
28464565 |
caacttcctaatgcacttttcttgctagctatttggtatgacaagatacaaaatgatgccatcatttggtatgcaaatggagacaaccctgcacccaagg |
28464664 |
T |
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| Q |
215 |
gatcaagattggtattaaatgattctcgtggtttggttctcaccaaccctcaaggtttagagttatggag |
284 |
Q |
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| T |
28464665 |
gatcaagattggtattaaatgattttcaaggtttggttctcaccaaccctcaaggtttagagttatggag |
28464734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 36 - 285
Target Start/End: Original strand, 28443637 - 28443886
Alignment:
| Q |
36 |
tgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttcaggagattttgcatttggattttaccaacttcctgatgatcttttc |
135 |
Q |
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| T |
28443637 |
tgttggtgagtcacttattgctggcagtggcacaactcgttggttctctccttcaggagatttttcatttggattttaccaacttcctaatgagcttttc |
28443736 |
T |
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| Q |
136 |
atgctagctatatggtatgagaagatacaagatgatgccatcatttggtatgcaaatggagacaaccctgctcctaagggatcaagattggtattaaatg |
235 |
Q |
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| T |
28443737 |
ttgctagctatatggtatgacaagatacaagatgatgccatcatttggtatgcaaatggaaacaaccctgctcctaagggatcaagattgatattaaatg |
28443836 |
T |
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| Q |
236 |
attctcgtggtttggttctcaccaaccctcaaggtttagagttatggagt |
285 |
Q |
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| T |
28443837 |
attctcatggtttggtgctgaccaaccctcaaggtttagagttatggagt |
28443886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 141; E-Value: 6e-74
Query Start/End: Original strand, 28 - 284
Target Start/End: Original strand, 28436396 - 28436652
Alignment:
| Q |
28 |
agtgtgagtgttggtgagtcacttactgctggaaatgagacaacacgatggctcactccttcaggagattttgcatttggattttaccaacttcctgatg |
127 |
Q |
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||||||||| | ||||| ||||| ||||||||||||| |||||| || |||||| ||||||| |||||||| ||||||||||||||||||||||| || |
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| T |
28436396 |
agtgtgagtctaggtgactcactcactgctggaaatgggacaactcgttggctctctccttcgggagatttcgcatttggattttaccaacttccaaatc |
28436495 |
T |
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| Q |
128 |
atcttttcatgctagctatatggtatgagaagatacaagatgatgccatcatttggtatgcaaatggagacaaccctgctcctaagggatcaagattggt |
227 |
Q |
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| |||||| |||||||||||||||||| || |||||| |||| |||||||||||||||||||||| |||||||||| |||||||||||||| |||||| |
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| T |
28436496 |
agcttttcttgctagctatatggtatgtcaaaatacaaactgattccatcatttggtatgcaaatggtgacaaccctgttcctaagggatcaacattggt |
28436595 |
T |
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| Q |
228 |
attaaatgattctcgtggtttggttctcaccaaccctcaaggtttagagttatggag |
284 |
Q |
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|||||||||||||| ||| ||| | |||||||||||||||||||||||| ||||||| |
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| T |
28436596 |
attaaatgattctcatgggttgatgctcaccaaccctcaaggtttagagctatggag |
28436652 |
T |
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